Gracilinanus agilis (agile gracile opossum): 123237881
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Entry
123237881 CDS
T07702
Symbol
SPG11
Name
(RefSeq) spatacsin
KO
K19026
spatacsin
Organism
gas
Gracilinanus agilis (agile gracile opossum)
Pathway
gas05014
Amyotrophic lateral sclerosis
gas05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
gas00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
123237881 (SPG11)
05022 Pathways of neurodegeneration - multiple diseases
123237881 (SPG11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gas03400
]
123237881 (SPG11)
DNA repair and recombination proteins [BR:
gas03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
123237881 (SPG11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
123237881
NCBI-ProteinID:
XP_044521010
LinkDB
All DBs
Position
2:524015515..524106923
Genome browser
AA seq
2447 aa
AA seq
DB search
MAAQEGAGSAYDRGVPPAQAMERVLPILLVPVPPEARARLGPCAQLHREQEVLGSLTVAG
SLQLLSLAPGSRNGKGCSLAGPFRHFVWENSYPSDSPTDKPKLLTLSDSNELCIHEFKMM
DGKCDIATLCSCSGDTLKKLIEDQNIRISSLSSLRILSFEKTSSLLLINQCIILHIEFPG
RDAEIKILSCFTLALPPQALERITDSQLCRGFLFVLDSSGWVYIFNAGDGTYLAHVNLIL
HQANVCDEQQQPAHMSSFSTLKVSQQLDVVVITSYSSSVIAVDLNVYFRQHPEHVLCERK
LENLPIKGPEGVDEDDPANSAYNMKLTRFSFQIDRSWKTQLSELYNRTKKPKLEVVSCVP
WFQGLLHFDPSESSNHPAQEQIWTFIPQDLTRFQYCHQGKDHVRSDDLKKLWKVMSIGEQ
EGMAELKCVSVTGFTVLFTWLVESMGWTIILWDLETQNVHRVFLGKKCIPVDCSGNQQLC
LVLTENGLSLILFGLTQEEFLTILMIHGSASTVDSLCHLNAWGRCSIPIHALEAGLENHQ
LDTVDFFLKSKENLFNPSSTSSVPTQTAKLPSHLYLKNVKELIPALDLLCSAIRENNSET
QSRHFSEQLLNLTLSFLNKQIRDVFAHTEELDEHMQNGVDILTTYIIELRTFMIKFPRKP
ADAINAYIGEDVPRINESEMWGKLSPEQVINNAILNNKIPEAQTFFRFTNHAAQNLEELI
RIGLELVFDRLLKNNIKEASELLKNMGFNVKDQLHKICLYTAEKNIRDFLVGILKEENYF
SEEEKRTIDYVYQVEKLYAGPFKENPETQALRSWRKEDDFSKHRSVLDFLKFSEKDEIYQ
QDRRIVLNWAQWWDCPTRESILLPRTSTEELKACSPQVLWMYITARHDWLSIFSWIEELY
TQKGCVSPLQAKWPHLTVDIIDQNTCSNDFLRNEILDTLARNGIFLTSELEDFELLLIRL
SRIGGVMQDPLPVQDYTSQKGLDFHSCFILYCLEHGLQHLLYVYLDYYHLTPLNCPLLEK
EELHETYPWFEFLIRCRQISSNLADPKLIFQASLANAQILIPSNQASVSSMLLEGHTLLA
LATTVYASGGLSQVIQKEEGETSLRKVDPQLLKMALTPYPKLRAALFPQYPVPNILPHDI
TLYHLIQSLSPFDPTRLFGWQATNTLTIADTSSDLPHFSSPDLVNKYAVIERLNFAYYLR
HGRPSFAFGTFLVQELSKSKSPKQLIQQAGNEAYMLALSFFHMPSVGAACVCFLELLGID
SLKLRVDMKVANIILSYKCRNEETQYNYIRESLAEKLVKLANGKKAATEELLSLLEEGIW
DSIQQQGISRTSSESGHQWSLVVQFCRLHNVKLSMAYLRECAKTNDWLQFIVHSQLHSYP
LEEVKSSLCYFSSVLQDHLQLAFENLPSFPNSKAHDRQAHDRSLQGTQSCQEEASTDLFQ
ILLQCPNEPDPWRYLLVKAMRLRAPILSILASCFQDASIVPCLSVWIITSVEDCVAAEAT
SHIQGSIEDHEWDLEDLSLIWRMLVTRRKSRTLTRSFQLFLKDSALLLMMEVYELCILCK
NYKDAQAKLLELQKNLEIIETADNPSPLVIPVPWLKCQVTLLWKLMLQQCKTQYELRKLL
QLFSEIDHLSDGPDVKKLCMLSQILKDTSIAISHSIITNYSTENFQQECRSILEKLQTEG
QFALARKIAGLAELPVDNLVIEEIIQEMKTLKHIGQWYLKQARIEFWKKCHENFKKNTIL
KRIASDFFLTQAIVTSESSADAKWCNIMERHLLLTLAGHWLAQEDPVPLGKLEELEKQIW
LCRITHHIHCSDQEVVESRLSRQISTSGELSFDSLSTDFSFSKLAALNTSKYLEINGFPS
REVSESRLDKNEAESLNFLIGRLLDDGSVHEASRVCHYFHFYNQDVFLVLHCRALASGEA
SVGDLHPEIQAILQNAELLEENEENEEERARPSIRRFQSTSSLDSQSFVIVPRGDEVTAH
LETLISRCLHGKNYCQQVLCLYELAKELGCTYGEISAQNSDAVLRAILSSQQPHRCKRAQ
AFITTQGLKADKVADLVAEEVMQELLASKAGKGQKLAASPAEEGLMFLQLTALCQDQTLV
GMKLLDKISSVPPGELSCTTELLILAHRCFTLTCHMEGIIRVLQAARLLTDNHLAPNDEY
GLVVRLLTGIGRYNEMTYIFDLLHRKHYFEVLMRKKLDPSGTLKTALLDYIKRCRPGDSE
KHNMIALCFSMCREIGENHEAAARTQLKLIESQPWEECIQDGPRLKQLLLKALTLLLDAA
ESYAKDSCVRQALHCHRLTKLITLQIHFLNSGQNTMLINLSGQNLTDCIMALPRFYQASI
VTEAYDFVPDWAEILYQQVILKGDFNYLEEFKQQRLLKTNIFEEISKKFKQCQPTETVTK
NMKKLLSYCEDVYLHYKLAYDHKFYDVVNKLLKEPQTGCCLNDMLAN
NT seq
7344 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcaagagggggccggaagtgcatacgaccgcggcgttcccccggcccaggct
atggagcgggtgctgcctattttgttggtgccagttccccccgaggccagagcaaggctc
gggccctgcgcccagttgcaccgggagcaagaggtgctgggcagcctcacggtcgcgggc
agcctccagctgctgtctctggcacccggcagccgcaacgggaaaggctgcagccttgcg
ggccccttccggcactttgtgtgggagaattcctaccccagtgactcaccaacagacaag
cctaaacttctgaccctcagtgatagtaatgaactgtgtatccatgagttcaagatgatg
gatggaaaatgtgacatagccacattatgtagctgcagtggggatacattaaaaaagcta
attgaagaccaaaatattagaatttcttccttatcgagtctgagaattctgtcatttgaa
aaaacctcatcattactgctcatcaaccaatgtattattttacatatcgaatttcctgga
agagatgctgaaatcaaaatcctgagctgcttcactttggccttacctccacaggctttg
gaaaggataactgactcacagctttgcagagggtttctttttgttttggatagttctggc
tgggtctacatttttaatgctggagatggcacgtatcttgcccatgtgaatctaatcctt
caccaagccaatgtatgtgatgagcagcagcagccagcccacatgtcttcattttccact
ctgaaagtgtcccaacagctagatgtggttgtgattaccagctactccagctctgtgatt
gctgttgacttaaatgtctatttcaggcaacatccagaacatgtactgtgtgagagaaag
ctagaaaatcttcccatcaaaggacctgaaggagtggatgaagatgaccctgccaactct
gcctacaacatgaaactgacaaggttttcattccagattgatagatcctggaaaactcag
ctgtcagaattgtacaacagaacaaagaagcctaagttagaagttgtgagctgtgtacct
tggttccagggtcttcttcattttgacccctctgaatcaagtaaccaccctgcacaggaa
cagatttggactttcattccacaagacctaactcgtttccagtactgccaccaggggaaa
gatcatgttaggtcagatgatttaaagaagttgtggaaggtaatgtccattggagaacaa
gagggaatggcagagctcaagtgtgtgtctgtgacaggattcactgtgctttttacgtgg
ttagtagaaagtatgggttggacaattattctgtgggacttggagacacagaatgtgcac
cgtgtttttcttggcaaaaaatgcattcctgtggactgcagtggaaaccagcagttgtgc
cttgttctgacagaaaatggactttctttgattttgtttggtttgactcaagaagaattc
ttgactatactaatgatccatggaagtgccagcactgttgattccctttgtcatctcaat
gcttgggggaggtgctcaatacctatacatgcgttagaggctgggttagagaaccatcag
ttggatacagtagacttctttttgaagagcaaggagaatcttttcaatccctcttccacc
tcttctgtacccacacagactgccaagcttccatcccatttatatttgaaaaatgttaag
gaactgataccagcattggatttactttgttcagctatccgagaaaataattctgaaact
cagagcagacacttttcagagcaactgctgaaccttacattatctttcctcaacaaacaa
atcagggacgtctttgctcacactgaagaattagatgaacacatgcagaatggtgtggat
attttgactacctatattattgaacttcgaacattcatgataaaatttcctcggaaacca
gctgatgccataaatgcatatattggtgaggatgtgcccagaataaatgagagtgaaatg
tggggaaagctcagccctgagcaagtcatcaacaatgccattttaaacaacaaaatacca
gaggctcagaccttcttcaggtttaccaaccatgctgctcaaaaccttgaagaactgatt
cgaataggattagaactagtctttgacaggctactaaagaacaatatcaaagaagcttca
gaactcttaaagaacatgggcttcaacgtaaaggaccagttgcacaaaatatgtttgtat
acagctgagaaaaacatacgggactttttggttggcattttgaaagaagaaaattatttt
tctgaagaagaaaagagaactatagactatgtatatcaggttgaaaaattgtatgcagga
cccttcaaagaaaacccagagacccaggccctccggagctggagaaaggaagacgatttt
tccaagcacagatctgttttagacttcttaaaattcagtgaaaaagatgaaatttatcag
caagatcgtagaattgttctaaactgggctcagtggtgggattgtccaacacgagaaagc
atccttctacctaggacatctacagaagaactcaaggcctgttctcctcaagttctctgg
atgtatataacagctcgtcatgactggttaagcattttctcatggattgaagaattgtat
acccagaagggttgtgtttcacctctacaggctaaatggccccatctgacagtagatatt
attgatcagaatacatgcagcaatgattttcttagaaatgaaatactggatacactggcc
agaaatggaattttcctaacatctgaactagaagactttgaactcttgctcataagacta
agccgtattggaggtgtgatgcaggatccacttcctgttcaagactatacttcccagaag
ggtttggatttccattcttgctttattctatattgcttagagcatggtctgcagcatctg
ctctacgtctaccttgattattaccaccttactcctttgaattgtccccttttggagaaa
gaagaattgcacgaaacttacccttggtttgaatttttgattcggtgtcgacagatttcc
agtaatctagcagatcccaaactgatttttcaggcaagtcttgctaatgctcagatactg
attcccagtaaccaagccagtgtgagcagtatgctgttggaaggacataccctcttggcc
cttgccacaacagtatacgcttctgggggccttagccaggtcattcagaaagaagaaggg
gaaacctctttgaggaaggtggatccccagctcctaaaaatggccttaactccttacccc
aagctcagagctgctctctttccacagtacccggtccctaatatcctgccccatgatatt
acactctaccaccttattcagtccttgtctccctttgatcccaccaggctgtttggctgg
caggccaccaatactcttaccattgcagatacttcaagtgatctccctcatttctctagt
cctgacctggtaaacaaatatgctgtaatagaacgtctgaattttgcttattatttacgt
catggacgaccatcatttgcatttggtacttttcttgttcaggaattatccaagagcaag
tctccaaagcaacttatccagcaagcaggaaatgaagcctacatgttggcactatccttc
tttcatatgccttcagtgggggctgcttgtgtttgtttcttggaattgcttggtattgac
agcctcaagcttagagttgatatgaaagtggccaacatcattttgagctataagtgtaga
aatgaagagactcagtacaactacatcagagaatccttagctgaaaaactagttaaactg
gctaatggtaaaaaagcagcaactgaagaattgcttagtctcttagaagaaggcatatgg
gatagtattcaacaacaaggaatatcaaggacgtccagtgagtcaggccaccagtggtca
ctggtggtgcagttctgtaggcttcataatgtgaagctgagcatggcttatcttagagag
tgtgctaaaaccaatgactggctacagttcattgttcacagccagctccacagctacccc
ctggaggaagtcaagtcctccctctgttacttcagctcagtcctacaggaccatttgcaa
ctggcctttgaaaatttgccttcatttccaaattccaaagcacatgataggcaggctcat
gacagatccctccagggcactcagagttgccaagaggaggcctccactgatttatttcag
attctgcttcaatgtcctaatgaaccagatccctggcgttaccttctggttaaagccatg
agactacgggcccccattctgagcatcttggcttcttgtttccaggatgccagcattgtt
ccttgtctgagtgtgtggatcatcacttctgtggaggattgtgttgctgctgaagcaaca
agtcacattcagggctcaatagaagaccatgaatgggatctagaggacctttcactcatc
tggaggatgttggtaacaagaagaaaaagcagaactcttactagaagcttccaacttttt
ctgaaggattctgctttgctgttgatgatggaggtgtatgaattgtgtatactctgcaag
aattacaaggacgcccaagccaaactgctagaactccagaagaatctcgaaattattgaa
acagcagataatccatcccctcttgtcattcctgtgccatggctgaaatgtcaagtcacc
cttctttggaagcttatgttgcagcagtgcaagacccaatatgaactacgaaaactctta
cagctgttttctgaaatagaccatctttctgacggtccagatgtgaagaagctgtgtatg
ctcagccagattttgaaggacacatccatagcgattagtcattctatcataaccaattac
agcactgagaactttcaacaggaatgcagatccattttggaaaagctgcagacagaaggg
cagtttgccctggcaaggaagatagcaggattggctgaattacctgtggacaacttggtt
attgaagagataattcaggagatgaagaccctaaaacatattggtcagtggtacctgaaa
caagcaagaattgaattctggaaaaaatgtcatgagaattttaagaagaacaccattttg
aaaagaatagcatctgacttttttttaacccaggccattgtgacatccgaatcctcagct
gatgcaaaatggtgcaacattatggaaagacatttgctacttaccctggcaggccattgg
cttgcccaggaggaccctgtgcccttaggaaagctagaagagctagagaagcagatatgg
ctttgtcgtattactcaccacatccactgtagtgaccaagaggtggttgaatcaagactt
tctcgacagatttctaccagtggtgaactttcctttgatagtttatccactgacttttct
ttctccaaattagctgccctgaatacctcaaagtacttagagattaatggctttccctct
agagaggtctctgagagtagactggataagaatgaggcagagtcattaaactttctgatt
gggcgtctgttagatgatggctctgtgcatgaagcaagcagagtttgccactattttcat
ttctataatcaagatgttttcttggtgttacactgtagagcactggcctcaggagaagct
agtgtaggtgatttgcacccagagatccaggctatccttcaaaatgctgagctgttggag
gagaatgaggagaacgaggaggagcgagcaagaccttcaattagaaggtttcagagcacc
tccagtctggatagtcagtcctttgttattgtgccacgtggtgatgaagtcacagcccat
ctggagaccttgataagcagatgtcttcatgggaagaactactgccagcaagtgctctgt
ctttatgaacttgccaaggagctgggctgcacttatggggaaatctccgctcagaacagt
gatgctgtgctccgagctatcctgtcctcccagcagcctcaccgctgtaagcgagcccag
gctttcattactacccaaggcctgaaggcagacaaggtggccgaccttgtggctgaagag
gtgatgcaggagctgctggcctccaaagcaggaaaaggtcaaaagctagcagccagtcca
gcagaagaaggcctaatgttcctccagttgactgctctgtgccaggatcaaacactggtt
ggcatgaagctgctagataagatttcctcagttccccctggggaactgtcctgtaccaca
gagctcctgatcctggcccatcgatgtttcactctgacatgtcacatggagggcatcatc
cgggtgttgcaggctgcacggctgctcaccgataaccatttagcccccaacgatgagtat
ggactggtggtacgcctcctgacgggcatcggcaggtacaatgagatgacctacatattt
gatttgctacacagaaaacactactttgaagtgttgatgaggaagaagctggacccgagc
gggaccctaaagacggcgctgctggactacatcaagcgctgccgccctggagacagtgag
aagcacaacatgattgctctgtgcttcagcatgtgccgggagattggggagaaccatgag
gcagctgcccgcacccagctcaagctcatcgaatctcagccctgggaggaatgcatccag
gatgggccccggctgaaacagctgctgctaaaagccctgacactgttgttggatgcggcc
gagagttatgctaaagattcctgcgtgcgccaggctctgcactgtcaccgacttaccaag
ctgataacactacaaatccactttctgaattctggccagaacacaatgctcatcaatctt
agcgggcagaatctgacagactgcatcatggccctgcctcggttctatcaggcctctatc
gtcactgaggcctacgactttgtcccagattgggctgaaattctgtatcaacaagtgatt
ctcaaaggtgacttcaattatctggaagaatttaagcaacaaaggttactaaaaaccaat
atatttgaagagatttccaagaaatttaagcagtgccagccaactgagacagtcacaaaa
aacatgaaaaagttactgtcgtactgcgaagatgtctacctgcattataagctggcatat
gatcacaagttttatgatgtcgtaaataagcttctcaaggagccccagaccggatgctgt
ctgaatgacatgttggcaaattag
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integrated database retrieval system
