Gracilinanus agilis (agile gracile opossum): 123238153
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Entry
123238153 CDS
T07702
Symbol
PDCD11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
gas
Gracilinanus agilis (agile gracile opossum)
Brite
KEGG Orthology (KO) [BR:
gas00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gas03009
]
123238153 (PDCD11)
Ribosome biogenesis [BR:
gas03009
]
Eukaryotic type
90S particles
Other 90S particles
123238153 (PDCD11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
OB_RRP5_4th
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
OB_RRP5
TPR_14
Suf
HAT_Syf1_CNRKL1_C
TPR_19
TPR_16
DUF2110
TPR_12
TPR_2
ARM_TT21_5th
TPR_1
TPR_7
TPR_8
BTAD
Motif
Other DBs
NCBI-GeneID:
123238153
NCBI-ProteinID:
XP_044521477
LinkDB
All DBs
Position
2:613992935..614036489
Genome browser
AA seq
1940 aa
AA seq
DB search
MASQEDSFPRGGSKKKAHPEKVPQQPVEHDNLFDIPTEEGSRKRKRNQEQAAKNKKSKTE
KKEPRKSEAEQSGILSIEVLSEGMRLLGCVKEVNNLELVISLPNDLWGYVQATNICDAYT
KKLNEQVDREEPLEDLAPLSKLFQPGMLVRCAVSSLKSTSKKNKSIKLSLNPKDVNGVLS
PAALKPGMLLTGTVDSVEDHGYLVDIGVGGTKAFLPWQKEQEYVKQKNKGTKLQVGQYLN
CLIEEVKGNGGSVRLSTIQSEVSAAIATEEQNWTLDNLLPGLVVKAQVQKVTPYGLSLSF
LSSFTGLVDFMHLDSKKTGHYFQTQMVRACILSVHPRTKSVRLTLHSSFLQAGRPITRLC
HHLIGAVLNDVPVQSFYTKAGATFRLKDGSLAYAKIGHLSQTEKSFKPEKFKPGNLHRCR
VIDFSPMDDLALLSLKTSIIEAPFLRYHDIQPGQIVKGKVFTLRSYGMIVKVTEQIKGLV
PTLHLADVQIRNPQKKYRVQDEVKCRVLMCDPENKKLLMTLKKTLVESSLPALTSYKEAK
PELQTHGFISSIKDFGCIVKFYNDVRGLVPQRELGAQPISAPEEVFYVGQVVKVTVLKSE
PEQERMLLSFRLSNDKETESTAQSQKKAMVKIGQLVDVKVKKKTEKGLEVSILPDNISAL
LPTTHLSDNVTNSQLLCYWLQAGDILHKVLCLSHNDGHIVLCRKPALISAVESGQDPKVF
SEFQPGMLLTGFVKSIKAYGIFVQFPSGLSGLAPKSALSDKFVTTISDHFVEGQTVVAKV
TNVDEEKQRMLLSLRLSDVIQEDTTASSLTLLSQCLEELQGVRSLMNNRDSVLTQTLAEM
TSGLLVDLVVQDMSSDGSLVFSNGSVPGLVLRASKYHQGGKAVDPGQRTKAVILHVDTQK
SEVHVSLRQELVNRKVKQLKKDTEHRAVIEHLEKTFAIASLVDSGQLIAFPVASHLNDTF
RFDSEKLQVGQGVSLIIKSTKPSDIGLFLAVESSVKKRTPALPSVAPESAGQEPGVVSEL
LEKPTLPIGEMVTGTVKSIKATHVIVTLENGLTGYIHASQILDDVPHGIHPTTTLKVGNP
VTARVIGQRTWLTHKSLPISHPSSTQTVSELSIRPSELEKNISSDPSTQSSSPTEKLKQY
SPGQTVICFMRKFNVIKKWLEVEISSDVRGRIPQLLTSLSFKVLKHPEKKFKIGQALSAI
VVGPASPKAFLNLSLIGPFKLEEGEVALGRVVKVIPKEGLEVIFPFGRIGKVSIFDLSDS
YLEEPLEGYHPEKIVRCCVLSNKDRILTLSLRQSRTNPKMKSKIEDPEVNSMKDIKEGQL
LRGYVEAIKKQGIFFRISPTLVGRVKYQHVTTYLPFDRALYQTYLPEGKLLSAKVLRVNR
KQNLLYLSFLPKDTGKPDVFPESLGLPPRDQERELLSNQPKKKRKLEQEEEDHGASETKK
KQQIKEKKEKKQLMKEKKEKQKQLMKEEKEKQKQLMKEKEKQKQLVKEKEKQRQTKEEMH
QEPRAKQKQEDQSQLHREPGAKRKQELQKPSVKPGEKGENKGKRKVPEVEREQETVSKKR
KQSHPLEEDDSGVEVNYKEEKEKRLKQSKKKQTKPTEVPRLQLSSGFAWDVSLDTLTPAM
PPREESSDSEDEEASQATLKKSKKGKELEKQEAEKELSRIEAALMDPNWKPETADDFDRL
VLSSPNSSILWLQYMAFHLHATEIEKARAVAERALKSISFREEQEKLNVWVALMNLENMY
GSKETLAKVFERAVQYCEPLKVYFQLADIYTKSEKYQAAEELYSRMLKRFRQEKTVWIRY
GAFLLQRGQADANHRLLQRSFSCLPQKEHVDVISKFAQLEFHLGDAERAKAMFETTLSSY
PKRTDVWSIYIDMIIKYGSQKEARDIFERVVHLSLAPKRMKFFFKRYLDYEKQHGTAETV
QAVKEKALSYVEATGTLAES
NT seq
5823 nt
NT seq
+upstream
nt +downstream
nt
atggcatcccaggaagacagcttccctcgtgggggttcaaaaaagaaggcacatccagaa
aaagttccccagcagccagttgaacatgataatttatttgatattcctactgaagaagga
tctcgcaaaagaaaaaggaaccaagaacaagctgctaaaaataaaaaatcaaaaacagaa
aaaaaagaacccagaaaatctgaagcagagcaaagtgggattctcagtattgaggttctg
agtgagggaatgcggctcctgggctgtgtgaaagaggtaaataatttggagcttgtgatc
agcctgcctaatgatctctggggatatgtgcaagcaaccaatatctgtgatgcttataca
aagaaactgaatgagcaggtggatcgggaggagcctctggaggacctggctcccttgtcc
aagttgttccagccagggatgctggtacgctgtgctgtcagcagcctaaagtctacctca
aagaagaacaagagcatcaagctgtccttaaaccccaaggatgttaatggagttctcagc
cctgccgccctaaagccaggcatgctgctcacaggcacagtagacagtgtggaagaccat
ggctacctggtggatattggcgtaggagggaccaaagccttcctgccttggcaaaaagag
caagagtatgtcaaacagaagaacaaaggtactaaacttcaggttggccagtatctgaac
tgccttattgaagaagtaaaaggcaacggggggagtgtccgtctgtctactattcaatcg
gaggtttctgctgccattgctacggaagagcaaaactggacactagataatctactacca
gggctggtggttaaagctcaggtgcagaaggtgaccccttatggtctctccctaagcttc
ctctcttccttcactggactggttgattttatgcacttggattctaaaaagactggacat
tacttccaaacccaaatggtgagggcctgtatcctctcagttcatccacgtaccaaatct
gtccgactaaccttgcattcctccttcctgcaagctggtcgtcccatcactcgtctctgc
caccatctcattggagctgtgttgaatgacgtgcctgtccagagtttctatacaaaggct
ggtgccaccttcaggctgaaggatgggtctctggcctatgccaagatcgggcacctctcc
cagactgagaaatcctttaagccagagaagttcaagcctggaaatctgcacagatgtcga
gttattgattttagcccaatggatgatctagcattgttatctctgaaaacgagcatcatc
gaagctccattcctgagatatcatgacatccagccagggcagatagttaagggcaaagtg
ttcacactaagatcctatggtatgattgtgaaggtgaccgagcaaatcaaaggcctggtg
cctaccttgcacttggctgatgtccaaatacggaatcctcagaaaaagtatcgcgttcaa
gatgaggtcaagtgccgggttctgatgtgtgaccctgagaacaagaaactgctaatgact
ttgaaaaagaccctggtggaatctagcctgccagctcttacaagttacaaggaagccaag
cctgagttacagacacatggtttcatcagcagcatcaaggactttggttgcattgtcaag
ttctataatgatgtgaggggattggtaccccagagggagcttggtgctcaacccatctca
gctccagaggaagtcttctacgtaggacaggtggtgaaggtcacagtcctgaaaagtgag
cctgagcaggagaggatgctcttgtccttcaggctgtccaatgacaaagaaacggaaagc
acagctcagagccagaagaaagccatggtcaagattggacagttagtagatgtgaaggtg
aaaaagaaaactgagaagggattggaggtgtccatcctacccgacaacatcagtgctttg
cttcccacaacccatctgtcagacaatgtcaccaacagtcagttgctctgctactggctc
caagcaggtgacatcctccacaaggtcttgtgtctgagccacaatgatggtcacattgtc
ctgtgcaggaaaccagccctgatctctgctgtggaaagtggccaggatcccaaggtcttt
tctgaattccagcctgggatgctgcttacaggttttgtgaaaagtatcaaggcctatggc
atctttgtccagttcccatctggcctcagtggattggctcccaaatcagccttgagtgac
aagtttgtaactacaatcagtgaccactttgtagaagggcagacagtggttgcaaaggtg
accaatgtggatgaggagaaacagcggatgctgctctccctgcgcctgtcagatgtcatc
caggaggacacaactgcaagttctcttactctcctaagccagtgtttggaggagctgcaa
ggtgttcgaagcctcatgaacaatcgagactctgtattgactcaaacattggctgagatg
acctcagggctacttgtggatttggtggtgcaagacatgtcaagtgacggctctctggtg
ttcagtaatggctcagtccctggcctggtgttgagggccagcaaatatcaccagggaggg
aaggcagtggatcctggacaaagaacaaaagctgtcatccttcatgttgatacacagaag
tcagaggttcacgtttctctgcgccaggagctggtgaacagaaaagtcaagcagctgaag
aaagatactgagcaccgagcagttatagaacacttggaaaagacatttgccatagcctcc
ttagtggattctggtcagcttatagctttcccagtggcctctcacctcaatgataccttc
cgttttgactcagagaagttgcaggttggtcagggggtctccttgatcatcaagagtacg
aagcccagtgacattggtctcttcttagctgttgagagctctgtcaagaagaggaccccg
gctttgccctcagtagctcctgagtctgcagggcaggagccaggagtggtgagcgaactt
ctggagaaacccaccttgcccattggggagatggtcaccggaactgtgaagtctatcaag
gctacccatgtcattgtgaccctcgagaatggccttactggctatatccatgcctcccag
atcttggatgatgtacctcatggcatccaccccactaccacacttaaagttggaaatcca
gtcactgctcgagtgattggccagagaacttggcttactcacaaatccctcccaattagc
catccatccagtacacagactgtctctgagttgagtattcgaccaagcgagcttgagaaa
aacatcagcagtgaccccagcactcagtcctccagccccacagagaagctcaagcagtac
tctcctggccagacggtgatctgttttatgagaaagttcaatgtaataaaaaaatggctt
gaggtggagatttcttctgacgtccggggaagaattcctcaactgctgacctctctcagt
ttcaaggttctgaagcatccagagaagaaatttaagattggccaagccctgagtgcaatt
gtggttggtccagcatctccgaaggccttccttaacctgtctctcataggtccttttaag
ttggaggaaggagaagtagccttgggccgggtggtgaaggtgatccccaaagaaggacta
gaagtcatcttcccctttgggagaattgggaaagttagcatctttgatctgagtgactct
tatcttgaggagcccctggaaggctaccacccagagaagattgtcaggtgttgtgtgctg
tccaacaaagaccgtatcctgactctgtcattacgacaatccagaacaaaccccaagatg
aaaagcaaaatagaagaccctgaagtgaactcaatgaaggacattaaagaagggcagctc
ctccggggctatgtggaggccatcaagaagcagggaatattttttcgcattagccccaca
cttgtggggcgggtcaagtaccagcatgttaccacatatctcccatttgaccgagctttg
taccagacctacctcccagaaggaaagctgctctcagccaaggtcttgagggtcaaccgg
aaacagaacctgttgtatctgtccttcctccccaaggacactgggaagccagatgtgttt
cctgaatctttgggcctgccaccacgggaccaggaaagggagttgctcagcaatcagccg
aagaagaagcggaaattggaacaagaggaggaagatcatggtgcctctgagacaaaaaag
aagcagcagatcaaagaaaagaaggaaaagaagcagctgatgaaagagaagaaggagaaa
cagaagcagctgatgaaagaggaaaaggaaaaacagaagcaactgatgaaagagaaggag
aaacagaagcagctggtgaaagagaaggagaaacagcgtcagacgaaagaggagatgcac
caagagcccagggcaaaacagaaacaggaggaccagagccagctacatagagaacctggg
gcaaaacggaaacaggagttgcaaaagccttctgtcaagccaggagagaagggagaaaat
aaagggaagcggaaagtgccagaggtggaaagagaacaggagacggtgagtaagaagaga
aagcaaagccatccactggaagaagatgatagtggagttgaagttaattataaggaggag
aaggagaagagacttaaacagtccaagaagaagcagactaagcccacagaagtccccagg
ctgcagctatcttcgggctttgcttgggatgtgagtctggatacactgaccccagccatg
ccaccccgagaagaaagttcggacagcgaagatgaggaagcaagccaagccacgctgaag
aaaagcaaaaagggcaaggagttggagaagcaagaggcagagaaggagctgtcacgaatt
gaggcagccctcatggacccaaattggaagcctgagactgcggatgactttgacagactg
gtcctgagctcccccaacagctccatcctctggctgcagtatatggccttccacctacat
gccacagagattgagaaggcccgagctgtggctgagagggcccttaagtccatctccttc
agagaggagcaggagaagctgaatgtgtgggtggccctgatgaacctggagaacatgtat
ggctcaaaggagaccctggccaaggtctttgagcgggctgtgcaatactgtgagcccttg
aaggtctacttccaactggctgacatctacaccaaatcagagaagtaccaggcagctgaa
gagctctatagtcggatgctgaagcgtttccgacaagagaagactgtgtggatcagatat
ggtgccttcctccttcagaggggccaggctgatgccaatcaccgcctgctgcagcgatcc
ttcagttgtctgccacagaaagaacatgtggatgtcatctccaagtttgcccagcttgag
ttccacctgggggatgcagaacgagccaaggccatgtttgagaccacacttagcagctac
ccaaagcgcacagatgtctggtctatctacattgacatgatcattaagtatgggagccag
aaggaagcccgggacatctttgagcgagtggtacacctgagcctggcccccaagcggatg
aaattcttcttcaaacgctacctggactatgagaaacagcatggcacagctgaaacggtg
caagctgtcaaggagaaggccttgagctacgtggaggccacaggcactcttgctgaaagc
tag
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