Gracilinanus agilis (agile gracile opossum): 123240058
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Entry
123240058 CDS
T07702
Symbol
SUPT5H
Name
(RefSeq) transcription elongation factor SPT5 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
gas
Gracilinanus agilis (agile gracile opossum)
Pathway
gas03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
gas00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
123240058 (SUPT5H)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gas03021
]
123240058 (SUPT5H)
03019 Messenger RNA biogenesis [BR:
gas03019
]
123240058 (SUPT5H)
Transcription machinery [BR:
gas03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
123240058 (SUPT5H)
RNA polymerase I system
123240058 (SUPT5H)
Messenger RNA biogenesis [BR:
gas03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
123240058 (SUPT5H)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW5_SPT5
KOW2_Spt5
KOW7_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
DUF3912
Ribonuc_P_40
Motif
Other DBs
NCBI-GeneID:
123240058
NCBI-ProteinID:
XP_044523360
LinkDB
All DBs
Position
3:28021136..28039962
Genome browser
AA seq
1089 aa
AA seq
DB search
MSDSDDSNFSEEEEEDSERSSDGDEAEEVEQVEEERRSVAGSEKEEEPEEEEEEEEEEEY
DEEEEEEDDDRPPKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEKEEIEASNIDNVV
LDEDRSGARRLQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGV
KDPNLWTVKCKIGEERATAIALMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTH
VKQAIEGVGNLRLGYWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGIYKDDIAQVD
YVEPSQNTISLKMIPRIDYDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVAS
DGDFLIFEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGK
EREHNFQPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKM
GDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQH
EWGELVQLDPQTVGVIVRLERETFQVLNMYGKVVTVRHQAVTRRKDNRFAVALDSEQNNI
HVRDIVKVIDGPHSGREGEIRHLFRGFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDV
TNFTVGGFAPMSPRISSPMHPSAGGQRGGFGSAGGGGMSRGRGRRDNDLIGQTVRISQGP
YKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSAYGRTPMYGSQTP
MYVQGSRTPMYSSQTPLHDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEY
EYAFDDEPTPSPQAYGGTPNPQTPGYPDPSSPQVNAQYNPQTPGTPAMYNTDQFSPYAAP
SPQGSYQPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAP
SPGGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDSQVVGQTGVIRSVTGGMCSVYLKD
SEKVVSISSEHLEPITPTKSNKVKVILGEDREATGDLLSIDGEDGIVRMDLDEQLKILNL
RFLGKLLEA
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacagcgatgacagcaacttttctgaggaggaggaggaggacagtgaacgaagc
agtgatggggatgaggctgaagaggttgagcaggtagaggaggagcgaaggagtgtggcg
ggcagtgagaaggaagaagagcctgaagaagaggaggaggaggaggaagaagaggaatat
gatgaagaagaagaggaagaagatgatgaccgtccccccaaaaagccaagacatgggggt
ttcatcctcgatgaagctgatgtggatgatgagtatgaagatgaagatcagtgggaagat
ggagctgaggacatcctagagaaggaagagattgaagcatccaacattgataatgtcgtc
ttggatgaggaccgctctggggctcgacgcctccagaatctctggagggatcagcgagag
gaggaactgggcgagtattatatgaagaaatatgctaaatcatctgtgggagaaactgtg
tatggagggtctgatgagctctcggatgacatcactcaacagcagctgctgcctggggtc
aaggatcccaatctgtggactgtgaaatgtaagattggggaggaacgagctacagcaata
gccctcatgagaaaatttattgcctaccagtttaccgacacaccattgcaaattaagtca
gtggtggccccagaacacgtcaagggctacatctatgtggaggcctacaagcagacacat
gtgaagcaggccatcgagggtgttggcaaccttcgcctaggctactggaaccagcagatg
gtgcccatcaaggagatgacagatgtgctcaaagtagtcaaggaggtcaccaacctcaag
cccaagtcctgggtccgtctcaagagaggcatctacaaggatgacattgcccaggtggat
tatgtagagccaagccagaataccatctctctgaagatgattcctcgaattgattatgac
cgaatcaaagcccgaatgagcctgaaagactggtttgccaagaggaaaaagttcaagaga
cccccacaaagattgtttgatgctgaaaagatacgttccctcggaggagatgtggcttca
gatggagatttcctgatctttgaggggaaccgttatagccgcaaaggcttcttgttcaaa
agcttcgccatgtcagcagtgatcacggagggggtgaagcccacattgtcagagctggaa
aaatttgaagaccaaccggagggaattgacctggaggtggtgaccgagagcacagggaag
gagcgtgagcacaacttccagcctggggacaacgtggaagtgtgcgaaggcgagttgatt
aaccttcagggcaagattctgagtgtggatggcaacaagattaccattatgcccaagcac
gaggacctgaaggacatgctcgagttcccagcccaggaacttcgaaaatacttcaagatg
ggggaccacgtgaaagtaattgccgggcggtttgagggcgacacagggctcattgtgcga
gtagaagagaactttgtgatcctcttctctgacctcaccatgcatgagctgaaagtgctt
cctagggacctgcagctctgctcagagacagcctcaggtgtggatgttgggggccagcat
gagtggggtgagctggtacagctggatccccagactgtgggagtcatcgttcggctggag
cgagagactttccaggttctgaacatgtatgggaaggtggtcacagtccggcatcaggca
gtgactcggaggaaggacaaccgctttgctgtggccttggattcagaacagaacaacatc
catgtcagggacattgtgaaggtcattgatggccctcattcgggcagagagggtgagatc
aggcatctgtttcgaggatttgcatttctccactgcaagaagctggtggaaaatggtggc
atgtttgtctgcaagacccggcacctggtgttggctggaggctccaaaccccgagatgtc
acaaacttcaccgtgggtggctttgccccgatgagcccccggatcagcagccccatgcac
cctagtgctggaggccagcggggaggatttgggagtgccggcggaggtggcatgagccgt
ggccgcggccgcagagataacgacctcatcggtcagactgtgcggatctcccagggcccc
tataaaggctacattggggtagtgaaggatgccaccgagtccacggcccgtgtagagctt
cactccacttgccagaccatttctgtggatcgccagaggctcaccacagttggctccagg
cgtccagggggcatgacttcggcttatggacgtaccccaatgtatggctctcagacaccc
atgtatgtccaaggctcccgtacccctatgtatagttcacagacccctctgcatgatggc
agccgcactccacattatggttctcagacaccccttcatgatggcagccgtacaccagcc
cagagcggtgcctgggaccccaacaaccccaatacaccatccagggcagaggaagagtat
gagtatgcttttgatgatgagcccaccccatccccgcaggcctatggtgggacccccaac
ccccagacaccaggctatccagacccctcatccccacaggtcaacgctcagtacaatcca
cagactcctggaacgcccgccatgtacaacacggaccagttttcgccctatgcagcccct
tcgccacaaggctcctaccagcccagcccccagagttaccaccaggtggcgccaagtcct
gctggctaccagaatacccactcacctgccagctaccaccccacaccctcgcccatggct
taccaggctagtcccagccctagtccagtgggctatagtccaatgacccctggggcgcca
tcccccggtggctataaccctcatacgccaggctctggtattgagcagaactccagtgac
tgggtgaccacagacatccaggtgaaagttcgagatacctacctggacagccaggtggtt
ggacagacgggcgtcatccggagtgtcacgggaggcatgtgctctgtgtatctgaaagac
agtgagaaggtggtcagcatctctagtgaacaccttgagcccatcactcctaccaagagc
aacaaggtgaaggtgatcttgggtgaggaccgagaggccacaggggacctgttgagcatt
gacggggaggacggcattgtgcggatggacctcgatgagcagctcaagatcctcaatctc
cgattcctggggaagctcttggaagcctag
DBGET
integrated database retrieval system
