Gracilinanus agilis (agile gracile opossum): 123240530
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Entry
123240530 CDS
T07702
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
gas
Gracilinanus agilis (agile gracile opossum)
Pathway
gas03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gas00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123240530 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gas03021
]
123240530 (PCF11)
03019 Messenger RNA biogenesis [BR:
gas03019
]
123240530 (PCF11)
Transcription machinery [BR:
gas03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
123240530 (PCF11)
Messenger RNA biogenesis [BR:
gas03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
123240530 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
Motif
Other DBs
NCBI-GeneID:
123240530
NCBI-ProteinID:
XP_044524126
LinkDB
All DBs
Position
3:107767444..107801880
Genome browser
AA seq
1695 aa
AA seq
DB search
MSEPAPAEAGTAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSTEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPPTPSTVV
SSPGISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSV
QQGATNIVPGSAPSKLLVSQIPPMAVKASHQVSVQPEKSRPSSSSSSQLQDMKVTNRDPR
LNRISQHSSHGKEQSHRKDFLVNTMNQSDIKANKSIPTDKQNSSKQEKSKSSEKITKKEL
DQLDTKSKSKSPSPLKNKFSHTKDIKNQESESRGVPEMSKRDPRLKKHLQDKPDGKDDDS
KEKRKSSEKKDKEEHVKSSEHRLTGGRNKIINGIVQKQEAGAEESEKQGTKTGRSSTRKR
SRSRSPKSRSPITHSPKRRDRRSPKRRQRSISPSTSTPKTGKLRQSGVKQSHVEEFTQPS
RDERNSNKRSAKQDTRDPRRVKKTQEERPQETVNQHSTKSGSEPKENVENWQSSKSTKRW
KSGWEENKSLQQGEEHQGLSKSPHLRHRESWASAKGILSSRAPKQQHRLSVDANLQIPKE
LTSASKRELLKKANDSLTSGEITQDEFLVVVHQIRQLFQYQEGKHRCSVWDSPTEENKGG
LKKKPLLSDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYHLTDALLSGIECEPSKS
KHTGRSSGAQFDRKEQFSERSRRLSPISGSRTYAENLSSHDGRRRHEEQVSAKGVREEQR
SPFGERFALKRPRYEDSDKTFADSPASRYSSLDTTNQRLTALAEDRPLFDGPSRPSVARG
DGPTKMIFEGPNKPNPRIDGPPTPASLRFEGSPGQIGGGGPMRFEGPQGQLGGGCPLRFE
GPQGPAGTPLRFEGPLGQAGGGGLRFEGAAGLRFEGPTGGLRFEGPAGQSVGGLRYEGPR
GQPVGGLRFEGPHGQPVGALRFENPRGQPVGGLRFEGSHGASGSGIRFEGPHGQPGGGIR
FEGPLLQQGGGMRFEGPHGQSVAGLRFEGQHNQLGGSLRFEGPHGQPGVGVRFEGPLVQQ
GSGMRFEGPSVQGGNMRFEGPLGQGGPRFEGCHASRFDGQPGQPSLLPRFDGLHGQPGPR
FERTPGQQGPQRFDGPPGQQVQPRFDTGPQRFDGPQHQQASRFDIPLGLQGARFDNHPSQ
RLDAVSFSQTGPYNDPPNNAFNAPSQGIQFQRHEQMFDTPQGPNFNGPHGPGAQGFSNPL
NRASGHYFDEKNLQGPQFGNFGNLPTPIAVGNIQPSQQVLSGVTQPVAFGQGQQFLPVHP
QNPGTFVQNPTGTLPRAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATTQVNEVTTQP
PPEEEEEDQSEDQDVPDLTNFTVEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYAD
HLDWHYRQNRTEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKT
QEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYE
DYQNTSSFDCTPSPSKTPVENPLNIMLNIVKKELQEPCDSSKVKEEPVDVPPACTDESVA
TSTEIKTEPETVESV
NT seq
5088 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagccggcgccggccgaggccggtaccgcgggggcccgggaggacgcctgtcgg
gattatcagtcgtccctggaagacctgaccttcaacagtaaaccgcacatcaatatgctg
accattctggctgaggagaacctgcctttcgccaaggagatcgtctccctcatcgaggcc
caaaccgccaaggctccttctacagagaagctccctgttatgtatcttatggattccatt
gtgaagaacgttggaagagagtatcttactgcctttactaaaaacctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctcc
acatgggatgacattttccctttgaagaaactttatgccttggatgtcagagttaattca
ttagatcctgcttggccaattaagcctctaccccccaatgtgaatacttctagcatccat
gtgaatcctaaatttttaaataaatcgcctgaagaacctcctacacctagcacagtggtc
agttcccctggtatctccactcctccaattgtccctgatatccaaaagaatttgacccaa
gagcaactgataaggcaacagctgctggcaaagcaaaaacagttgttagaacttcagcag
aaaaaattggagctggagctggaacaaactaaggcacaactggcagtttctcttagtgtt
cagcaaggggcaactaacatagttcctggatcggcaccttccaaattacttgtttcacaa
attccacctatggcagttaaagcttctcatcaggtttctgtacagcctgaaaagagtcgc
ccctcttcatcctcatcatcacagctacaggatatgaaagtaacaaacagagatccccgt
cttaatcggataagccaacattcttctcatggtaaagaacaaagtcacaggaaagacttt
ctagtgaatacaatgaatcaatctgatatcaaggcaaataaatctatacctactgataaa
cagaactcatcaaagcaagaaaaaagtaaatcaagtgaaaaaatcacaaagaaagaactt
gaccagttagatactaagtccaaatctaaatctccttcacctttgaaaaacaaattttct
catacaaaagatataaaaaatcaggaatctgaaagtcgaggggtccctgaaatgagcaaa
agagatccacgattaaaaaaacacctccaggataagcctgatggcaaagatgatgactca
aaagagaagagaaagtcctcagaaaaaaaagataaagaagagcatgtgaaatcatctgaa
catagactcactggaggtagaaataaaattataaatggcattgtacaaaaacaagaagct
ggtgctgaagaatcagaaaaacaagggacaaaaacaggaagatcaagtactagaaaacgg
tcacgatcacgatctcccaagtctcgatcaccaattacgcattctccaaaaaggagagat
agacgctcacctaaacgaaggcaaagaagcatttctccttctacttctacacctaaaact
ggaaagctacgtcaatcaggagttaagcagtcacatgtagaagaatttacacaaccttct
cgtgatgaaagaaattctaataagagaagtgctaagcaggacactcgagatcctaggcga
gtaaaaaagactcaagaagagagaccacaagaaactgtaaatcagcattctacgaaatcg
ggatcagaaccaaaggagaatgtagaaaattggcaaagttctaagtctacaaaaagatgg
aaatctggttgggaggaaaacaaaagcttacaacagggtgaagagcatcaaggacttagt
aaatcacctcatctaagacatagagagagttgggccagtgctaaaggaattttatcatcc
cgagcccctaaacaacaacatcgattaagtgtagatgccaatcttcagattcctaaagaa
ttaacttctgcaagcaaacgagaattacttaaaaaggcaaatgatagtttaacatctggt
gaaattacacaggatgaatttcttgttgttgttcatcagattcgtcagctctttcaatat
caagaaggaaaacatagatgcagtgtgtgggatagtcctacagaagaaaataaaggtgga
ttaaaaaagaaacctctcttatctgatgctgaattaacctattatgagcataaagctaaa
ctcaaaaggacacaagttcagcattcgtttccaagacttgatctcttggatcccgatatt
tttgattaccatttgactgatgctttgttgtctggaatagaatgtgaaccatccaaaagt
aaacatacaggtaggagtagtggagcacaatttgacagaaaagagcaatttagtgaaaga
tcaaggcgtctttctccaatatctggaagccgtacttatgctgagaatctttcttcccat
gatggtcgaagaagacatgaagagcaagtctctgctaaaggtgtccgagaagagcaaagg
tctccatttggtgagcgttttgcacttaagagacctagatatgaagattcagataaaaca
tttgcagacagcccagcatcgagatattcaagcctcgatacaacaaatcagagacttaca
gcattagctgaagacagaccattatttgatggaccttctaggccatctgtagcaagagga
gatggcccaactaaaatgatttttgaaggacccaataagccaaatcctagaattgatgga
cctccaacaccagcttctcttcggtttgaagggtcaccaggacaaatagggggaggggga
cctatgaggtttgaaggaccacaaggtcagctaggaggtgggtgtcctttgagatttgaa
ggtcctcaaggaccagcagggactcctttgaggtttgaagggccacttggacaggcagga
ggcggcggcttgaggtttgaaggagctgctggtttgcggtttgagggtcctacaggtggt
ttgaggtttgagggcccagctggccagtccgtgggaggtcttagatatgagggtcctcgt
ggtcagcctgtgggtggtcttaggttcgagggacctcatggtcagcctgtgggtgctcta
aggtttgagaatccccgaggtcagcctgttggtggactcagatttgagggaagccatggt
gcctcaggaagtggaattagatttgagggaccccatggtcagccagggggtggaatcaga
tttgagggccccttgctccagcagggtggcggtatgagatttgagggtccccatggccag
tcagtggcaggtcttagatttgaaggacaacataatcagcttggtggaagccttcgattt
gaaggaccacatggtcagccaggggttggagtcagatttgaaggacccttagttcaacag
ggaagtggaatgagatttgaaggtccttctgtacaaggaggtaatatgagatttgaagga
cctctaggtcaaggtggaccaagatttgagggatgtcatgcttcaagatttgatggtcaa
ccaggtcagccatctcttttgccaagatttgatggtttgcatggtcagcctggtcctaga
tttgaaagaactcctggtcaacaaggcccacaaaggtttgatgggccgcctggtcagcag
gtacaacctagatttgatacagggcctcaaagatttgatggtccacaacaccagcaagca
tcgaggtttgatattcctcttggtcttcaaggtgcaaggtttgacaatcatccttcacag
agacttgatgccgtttcttttagtcagactggcccatataatgaccctcccaataatgca
tttaatgcaccatcgcaaggaatacagttccaaagacacgagcaaatgtttgatacacct
cagggaccaaattttaatggaccacatggccctggagcacaaggtttctcaaatccactt
aacagagcatctggacattattttgatgaaaagaatcttcagggtccacagtttggaaac
tttggtaatctgcccacaccaattgcagtagggaatattcagccatctcaacaagttctc
tctggtgttactcagcctgtagcttttggacaaggacaacagtttttaccagttcatcca
caaaatcctggtacttttgttcagaatccaacaggtactcttccacgagcatatcctgat
aatcatctcagccaggttgatgtcaatgaactgttctctaaactgctaaaaacaggaata
cttaaattatctcaacctgattcagcaacaacgcaagtaaatgaagttactacacagcct
ccccctgaggaagaagaagaagatcaaagtgaagatcaagatgttcctgacctcactaat
ttcacagttgaagaattgaaacagcgttatgatagtgttataaatcgactatatactggt
atccagtgttattcttgtggaatgaggtttacaacatcacagactgacgtctatgcagac
catttggactggcattatcgacaaaatagaactgaaaaggatgttagcagaaaagttact
cataggaggtggtactacagtttaaccgactggatagaatttgaggaaatagctgatttg
gaggaacgtgcaaagagccaattctttgaaaaggtacatgaagaggttgtgttgaaaacc
caagaagctgctaaagaaaaggagtttcagagtgtccctgctggaccagctggggcagta
gagagctgtgaaatatgtcaggagcaatttgaacaatactgggatgaagaggaggaagaa
tggcatctaaaaaatgctatccgagtagatggaaagatttaccatccatcatgttatgaa
gattatcaaaatacatcttcatttgattgtacaccatctcccagcaagacacctgttgaa
aatcccttgaatattatgttgaacattgtcaaaaaagaactgcaggaaccctgtgacagt
tccaaagttaaagaagaaccagttgatgtcccaccagcctgtacagatgaaagcgtagct
acatctactgaaattaaaacagaacctgaaacagttgagtcagtttaa
DBGET
integrated database retrieval system
