Gracilinanus agilis (agile gracile opossum): 123242143
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Entry
123242143 CDS
T07702
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
gas
Gracilinanus agilis (agile gracile opossum)
Pathway
gas03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gas00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123242143 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gas03041
]
123242143 (SF3B1)
03036 Chromosome and associated proteins [BR:
gas03036
]
123242143 (SF3B1)
Spliceosome [BR:
gas03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
123242143 (SF3B1)
Complex B
123242143 (SF3B1)
Complex C
U2 SnRNP specific factors
123242143 (SF3B1)
Chromosome and associated proteins [BR:
gas03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
123242143 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
123242143
NCBI-ProteinID:
XP_044525609
LinkDB
All DBs
Position
3:216283965..216332627
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AA seq
1303 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGNDSRFAGYVTSIAA
TELEDDDDDYSSSTSLLGQKKSGYQPTVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
LKVVNGASSQPPSKRKRRWDQTADQTPGATPKKLSNWDQAETPGHTPSLRWDETPGRAKG
SETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTER
DTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIG
TPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGY
VPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVD
VDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMS
PTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLA
KAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQAR
HTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGI
ESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPD
EEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELA
NKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQ
EQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVV
MKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLT
PILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTF
GYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPEL
NVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYG
FGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKV
RDVYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYIL
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaactcacgaagatattgaagcacagattcgagaaatccaaggg
aagaaggcagctcttgatgaagctcaaggagtgggccttgattctacaggttattatgac
caagaaatttatggtggtaatgacagcagatttgctggctatgtgacatcaattgctgca
actgaattagaagatgatgatgatgactattcctcatccacaagcctgcttggccagaag
aaatcaggatatcaacccacagtggcattgcttaatgacataccacagtcaacagaacag
tatgacccatttgctgaacatcgccctccaaagattgcagaccgcgaagatgaatataaa
aagcacaggcgaactatgataatttctccagagcggcttgatccttttgcagatggaggc
aagacacctgatcctaaaatgaatgctaggacatacatggatgttatgcgagaacagcat
ttgactaaagaagagagggaaattaggcaacagctagcagaaaaagctaaagctggagaa
cttaaagttgtcaatggtgcatcatcccagcctccatcaaaacgcaaaaggcgttgggat
cagacagctgatcagactcctggtgcaactccaaaaaagctctcaaactgggatcaagca
gagactcctgggcatacaccttctttgaggtgggatgaaacacctggtcgtgcaaagggt
agtgagacacctggagcaacacctggctcaaaaatatgggatcctactcctagccatact
ccagcaggagctgctactcctggacgtggtgatactcctggtcatgcaacaccaggccat
ggaggtgcaacttcaagtgcacgtaaaaacagatgggatgagactcctaaaactgagaga
gatactcctggtcatggaagtggatgggctgagactcctcgtacagatcgtggtggagat
tcaattggtgaaacaccaactcctggagcaagcaaaagaaagtcacgttgggatgaaaca
ccagctagtcagatgggtggaagtactcctgttctgactcctggtaaaacaccaattggc
acacctgctatgaacatggcaacacccactccaggtcacataatgagcatgactcctgaa
cagcttcaggcatggagatgggagagagaaattgatgaaagaaatcgtccactttctgat
gaagagctggatgctatgttcccagaaggatataaggtactgccccctccagctggctat
gttcctattcgtactccagctcgaaagttgacagccactcctacacctttaggtggcatg
actggattccacatgcaaactgaagataggactatgaaaagtgttaatgaccaaccatct
ggaaatcttccctttttaaaacctgatgatattcaatactttgataaactgttggtggat
gtagatgaatcaacacttagtccagaagaacaaaaagagagaaaaataatgaaattgctt
ttaaaaatcaagaatggtacacctccaatgagaaaggctgcattgcgtcaaatcactgac
aaagcgcgtgaatttggagctgggcctttatttaatcagattcttccattgctgatgtct
ccaacacttgaagatcaagagcgtcatttgcttgtaaaagttattgatagaattttgtat
aaactggatgatttggttcgaccatatgtgcacaagatccttgtggttattgaaccacta
ttgattgatgaagattactatgccagagtggaaggcagggaaataatttcaaatttggct
aaggctgctggcctggcgaccatgatttccactatgagacctgatattgataacatggat
gaatatgtccgtaacacaacagctcgagcttttgctgttgttgcctctgccttgggcatt
ccttctttgttgccctttttgaaagctgtgtgtaagagcaagaagtcctggcaggcgagg
catactggtattaaaattgtgcagcaaattgctattcttatgggttgtgctatcctccct
cacctcagaagtttagttgaaatcattgagcatggtcttgtggatgaacaacagaaagtc
cggaccatcagtgctttggctattgctgctctggctgaagcagctactccttatggcatt
gaatcttttgattctgtgttaaaacctctgtggaaaggtatccgccagcacagaggaaag
ggcttggctgctttcttgaaagccattggataccttattcctcttatggatgcagaatat
gcaaactactatactagagaagtcatgttaatccttatcagagaattccagtctcctgat
gaagaaatgaaaaaaattgtgttgaaggtggtaaagcagtgctgtgggacagatggtgta
gaagcaaattacatcaaaacggaaattcttcccccatttttcaaacatttttggcaacac
agaatggctttggaccgaagaaattatagacagttagtagataccacagtggagttggca
aacaaagtaggtgcagcagaaattatttcccggattgtggatgatctgaaagatgaggct
gaacagtacaggaagatggttatggaaactattgagaaaataatgggcaacttgggtgca
gcagatattgaccacaaacttgaagagcaacttattgatggcatcctttatgcctttcag
gaacagaccacagaggactcagtgatgttgaatggttttggcacagtggtcaatgccctt
ggcaaaagagtcaaaccatacttgccccagatctgtggtacagttttgtggcgtttgaac
aacaaatcagccaaagtgagacaacaggctgctgacctcatctctcgtactgctgttgtt
atgaaaacttgtcaggaggaaaaactgatgggacatttgggtgttgtcttgtatgaatac
ttgggtgaagagtaccctgaagtattgggaagcatcctgggagcactgaaggccattgtg
aatgtaataggtatgcacaagatgactccaccaattaaggacttattgccaaggcttaca
cctatcttaaagaacagacatgagaaagtacaagaaaactgtattgatcttgttggacgt
attgctgacaggggagcagaatatgtctctgcaagagaatggatgagaatttgctttgaa
cttttagaattgttaaaagctcataaaaaagctatccggagagccacagtcaacacattt
ggttatattgcaaaagccattggaccacatgatgtgttggccacactgctaaacaacctc
aaagttcaagaaagacagaaccgagtatgtactacagtggccatagctattgtagcagag
acatgttcacccttcacagtcctgcctgcactaatgaatgaatatcgagttcctgaactg
aatgttcagaatggtgttttaaaatcactttctttcttgtttgaatacattggagaaatg
ggaaaagactatatttatgctgtaacaccgttacttgaagatgctttgatggacagagat
cttgtacatagacagactgccagtgcagtggtgcagcacatgtctcttggggtttatgga
tttggttgtgaagattctcttaatcatttgttgaattatgtatggcctaatgtatttgag
acatctccccatgttattcaagcagttatgggagccctggagggcctaagagttgctatt
ggaccatgtagaatgttacaatactgtttgcagggtttgtttcacccagccagaaaagtc
agagatgtatactggaagatttacaattctatctacattggttcacaggatgcactcata
gcacattatccaaggatctacaatgatgaaaaaaacacctatattcgttatgaacttgac
tatatcttataa
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integrated database retrieval system
