Gracilinanus agilis (agile gracile opossum): 123242255
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Entry
123242255 CDS
T07702
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
gas
Gracilinanus agilis (agile gracile opossum)
Pathway
gas03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gas00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123242255 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gas03041
]
123242255 (PRPF40A)
Spliceosome [BR:
gas03041
]
Complex A
U1 snRNP components
U1 related factors
123242255 (PRPF40A)
Complex B
123242255 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
123242255
NCBI-ProteinID:
XP_044525797
LinkDB
All DBs
Position
3:275635700..275691753
Genome browser
AA seq
1042 aa
AA seq
DB search
MQATPSEAEAGGESPQSCVQAARSDWTAGKPVSLLAPLIPPRSSGQPLPFGPSGRQPLRS
LLVGMCSGSGRRRSSLSPTMRPGTGAERGGLMVSEMENRPPPRGPGNGERRLSSSSLCSS
PWASADGYLRRRPSMGHPGMHYPPMGMHPMGQRGNMQPVPHGMMQQMMPPMGGPPMGQMP
GMMSSVMPGMMMTHMSQASIQPALPPGVNNMDVAVGATSGTQKSMWTEHKSPDGRTYYYN
TETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEG
YQNTIVAGSLITKSNLHAMIKAEESSKEESTTTSAAPVPTTEITTTMSTMAAAEAAAAVV
AAAAAAAAAAAAANASANAAISTPSSIVASTTPIVTEPEVTSIVATVIDNDNTVTISTEE
QAQLVTPIVHEQSVEVSSNVPEETSKQEASVDYTPKKEEEDSQPAKKTYTWNTKEEAKQA
FKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSK
YKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKE
KEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALI
CFEEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPT
ISSDIRFTNMLGQPVFSLGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFLVEVNTT
FEDFVAVISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLK
QAAPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHS
KKSKKHHRKRSRSRSGSDSDDDDSHSKKKRQRSESRSASERSSSAESERSYKKSKKHKKK
SKKRRHKSDSPESDADREKDKKEKERENEKDRTRQRSESKHKSPKKKTGKDSGNWDTSGS
ELSEGELEKRRRTLLEQLDDDQ
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcgacgccgagcgaggccgaggccgggggcgaatcgccgcagagctgcgtgcaa
gcggcgcgctctgattggacggcggggaagccagtcagcttattggccccgctgatcccg
ccccgcagctccgggcagcctctaccctttggccccagcgggcgccagccactcagatcg
ctccttgttggaatgtgtagcggcagcggccgccgccggagcagcctcagcccgacgatg
aggccggggacgggagccgagcgtggaggcctcatggtgagtgaaatggagaaccgccct
ccaccgcggggtcccgggaacggggagcggagactgtccagctcaagcctctgctccagc
ccatgggcctctgcggacggctacctgaggagacggccctcgatgggacaccctggcatg
cattatccacccatgggaatgcaccctatgggtcagagaggaaatatgcaacctgtacct
catggaatgatgcagcaaatgatgccccctatgggaggtcctccaatgggacaaatgcct
ggaatgatgtcttcagtcatgcctgggatgatgatgactcatatgtctcaggctagcata
cagcctgctttaccgccaggagtaaacaatatggatgtagcagtaggtgcaacatctggc
acacaaaaatcaatgtggactgaacataaatctcctgatggaaggacttactattataac
acagaaacaaagcaatctacatgggaaaaacctgatgatctcaaaacacctgctgagcaa
ttattatctaaatgcccctggaaggagtacaaatctgactctggaaagccttattattac
aattctcaaacaaaagaatctcgttgggccaaacccaaggaactcgaggatcttgaagga
taccagaataccattgttgctgggagtcttattacaaaatcaaacctgcatgctatgatc
aaagctgaagaaagcagtaaagaagaatcaaccacaacatcggctgccccagttcctaca
acagaaattacaactacaatgagtacaatggctgctgctgaagctgcggctgctgttgtt
gcagctgctgctgctgctgccgctgctgccgctgcagccaatgccagtgctaatgctgcc
atttcaactccttcctctattgtcgcttcaactacaccaattgtcactgagcctgaagtt
acttccattgttgctactgtcatagataatgacaatacagtaactatttcaactgaggaa
caagcacaacttgttacacctattgttcatgaacaaagtgtagaagtatccagcaatgta
ccggaagaaacttcaaagcaggaggcttcagtagattataccccaaaaaaggaggaagaa
gatagtcaacctgctaaaaaaacatatacttggaatacaaaagaagaagcaaagcaagct
tttaaagaattattaaaagaaaagagagtaccatccaatgcctcatgggagcaagcaatg
aaaatgattattaatgatccccgatacagtgccctggcaaagctcagtgaaaaaaagcaa
gcctttaatgcatataaagtccagacagagaaagaagaaaaagaagaagcaagatcaaaa
tataaggaagctaaggaatcttttcaacggtttcttgaaaaccatgagaagatgacttcc
actaccagatataaaaaagctgaacaaatgtttggagagatggaagtatggaatgcaata
tcagagcgagatcgtcttgaaatttatgaagatgtgttgttttttctttcaaaaaaggaa
aaggaacaagcaaagcaactgcgaaagagaaattgggaggccttgaaaaatatacttgac
aacatggctaatgttacctattccacaacatggtctgaggcccagcaatacctgatggat
aaccctacctttgccgaggatgaggagctacagaacatggacaaagaagatgcattgata
tgttttgaagaacacatccgggctttagaaaaagaagaggaagaagaaaaacagaagagt
ttgttaagagaaagaaggcgtcaacgtaaaaatagagaatcttttcagatatttttagat
gagttacatgaacatggacagctgcattctatgtcatcttggatggagttatatccaaca
attagttctgatattagattcaccaacatgcttggtcagcctgttttttcattaggatca
actgcacttgatcttttcaagttttatgttgaggatctaaaagcacgttatcatgatgaa
aagaagataataaaagacatcctaaaggataaaggatttctggttgaagtaaatactact
tttgaagattttgttgcagtaatcagttcaaccaaaagatcgacaacattagatgctgga
aacatcaaattggcttttaatagtttgttagaaaaggcagaagcccgtgaaagggaacga
gaaaaggaagaggcgcgtaagatgaaacgaaaagagtctgcatttaagagtatgttgaaa
caggctgctcctccgatagaattggatgcagtctgggaagatatccgggaaagatttgta
aaggaaccagcatttgaggatatcactctagagtcagaacgaaaaagaatatttaaggat
ttcatgcatgtgcttgagcatgaatgtcagcaccatcattcaaagaacaagaaacattct
aaaaaatctaaaaaacatcacaggaaacgttcacgttctcgatcgggctcagattcagat
gatgatgacagccattcaaagaaaaagaggcaacggtcagagtcccgatctgcttcagaa
cgttcttctagtgctgagtctgagagaagttacaagaaatcgaaaaagcataagaagaaa
agcaagaagaggagacataaatctgattctccagagtctgatgctgatcgagagaaggat
aaaaaagaaaaagaacgagaaaatgaaaaggatagaactaggcagagatcagaatcaaaa
cacaaatcacccaaaaaaaagactggaaaggattctggtaattgggatacttctggcagt
gaactgagtgaaggggaattagaaaagcggagaaggaccctcttggaacaactggatgat
gatcaataa
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