Gracilinanus agilis (agile gracile opossum): 123243206
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Entry
123243206 CDS
T07702
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
KO
K12857
Prp8 binding protein
Organism
gas
Gracilinanus agilis (agile gracile opossum)
Pathway
gas03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gas00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123243206 (SNRNP40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gas03041
]
123243206 (SNRNP40)
Spliceosome [BR:
gas03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
123243206 (SNRNP40)
Complex C
U5 SnRNP specific factors
123243206 (SNRNP40)
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Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EML
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_SPT8
ANAPC4_WD40
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_Vps41
eIF2A
Beta-prop_WDR75_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_NWD2_C
Beta-prop_HPS5
Cytochrom_D1
WD40_like
WDR54
PROPPIN
Motif
Other DBs
NCBI-GeneID:
123243206
NCBI-ProteinID:
XP_044527339
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Position
3:complement(70113632..70164811)
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AA seq
361 aa
AA seq
DB search
MIEQHKRKGPELPLVPLKRPRHELLLGAAGPGAGAGPAAGQQPPPGALLQAGPPRCSSLQ
APIMLLSGHEGEVYCSKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELH
YNTDGSMLFSASTDKTVAVWDSETGERIKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTV
KLWDIRKKAAVQTFQNTYQVLTVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD
SVTGLSLSSEGSYLLSNAMDNTVRIWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD
GSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSVNEVAFHPDEPIILSASSDKRLYMGEI
Q
NT seq
1086 nt
NT seq
+upstream
nt +downstream
nt
atgatcgagcaacacaagcgaaagggcccggagttgccgctggtgcccctcaagcggccc
cggcatgagctgctgttgggagcggccggaccaggggctggggccgggcctgctgcgggc
cagcagccgccgccgggggccctgctacaagcaggtcctccacggtgttcctctcttcag
gctcctatcatgctgctctcgggacacgaaggggaagtatactgtagcaagttccaccct
aatggatccaccctagcatctgcaggatttgaccggctcatcttgctgtggaatgtgtat
ggtgattgtgataactatgccaccctgaaaggacacagtggggcagtcatggagttgcat
tataatacagacgggagtatgctcttctcagcttccacagataagactgttgctgtgtgg
gatagtgagactggagagagaattaagaggctgaaggggcacacttcctttgtgaattcc
tgttaccctgcccggaggggcccccagctagtctgcactggcagcgatgatggcacagtt
aagctttgggatatccggaagaaagcagctgtccagacatttcagaatacctaccaggta
ttgactgtgaccttcaatgacactagtgatcagattatctctggtggcattgacaacgat
atcaaggtctgggacttgcgccagaacaaactgacatacaccatgaggggccatgccgac
tctgtgacaggcctgagtctaagttccgaagggtcttacctgctctccaacgcaatggac
aacacagttcggatctgggatgtccggccttttgcccccaaagagaggtgtgtgaagata
tttcagggaaatgtgcataactttgagaagaatctcctgaggtgttcctggtcacctgat
ggaagcaaaattgcagccggatcagctgacaggtttgtgtatgtgtgggatactacaagc
aggaggatcctttacaagctgcctggccatgctggctcagtcaatgaagtggccttccac
ccagatgaacccatcattctctctgcatccagtgacaaaagactttatatgggagagatc
cagtga
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