Gracilinanus agilis (agile gracile opossum): 123243247
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Entry
123243247 CDS
T07702
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4
KO
K13126
polyadenylate-binding protein
Organism
gas
Gracilinanus agilis (agile gracile opossum)
Pathway
gas03015
mRNA surveillance pathway
gas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gas00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123243247 (PABPC4)
09123 Folding, sorting and degradation
03018 RNA degradation
123243247 (PABPC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gas03019
]
123243247 (PABPC4)
03041 Spliceosome [BR:
gas03041
]
123243247 (PABPC4)
Messenger RNA biogenesis [BR:
gas03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
123243247 (PABPC4)
mRNA cycle factors
Stress granule specific factors
123243247 (PABPC4)
Spliceosome [BR:
gas03041
]
Complex C
Other components
Complex C specific factors
123243247 (PABPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RRM_occluded
RBD_RDR6
RRM_10
RRM_3
TEX47
POP1_C
NOP5NT
Motif
Other DBs
NCBI-GeneID:
123243247
NCBI-ProteinID:
XP_044527400
LinkDB
All DBs
Position
3:77309433..77329434
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AA seq
630 aa
AA seq
DB search
MNTAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEK
HEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPDEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRALPANTIINQFQPTPGGYFMPAVPQAQNRP
PYYAPNQIAQMRPNPRWQQGGRPQGFQGVPNTIRQSGPRPALRHLTPTSNTQASRGLPTT
PQRVGVPTAVQNLSPRPSVATPAPRAVPPYKYAANVRSPHPAIQPLQTPQPAVHVQGQEP
LTASMLAAAPPQEQKQMLGERLFPLIQTMHNNLAGKITGMLLEIDNSELLHMLESPESLR
SKVEEAVAVLQAHHAKKEAAQKVAVVAATS
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgaacactgctgcgagcagttaccccatggcctccctatatgtcggtgacttgcactca
gatgtcaccgaagccatgctgtacgagaagttcagccctgctggacccgtgctgtccatc
cgggtctgcagggacatgattaccaggcgctccctgggatatgcctatgtcaactttcag
cagccagctgatgctgaacgtgccctggataccatgaactttgatgtaattaaaggcaaa
ccaatccgtatcatgtggtctcaacgggatccctcattgaggaaatcaggagttgggaat
gttttcattaaaaacctggataaatccatagacaacaaggcactttatgacaccttttca
gcatttgggaacatcttgtcctgcaaggtggtgtgtgatgaaaatggttctaaaggctac
gcatttgtgcactttgagacccaggatgctgcagatagggccatcgagaagatgaacggc
atgcttctcaacgaccgaaaagtgtttgttggtagattcaagtcaaggaaagaacgagaa
gcagagctgggagccaaagctaaggaattcaccaatgtgtacatcaaaaactttggtgat
gatatggatgatggaagactgaaggagcttttcagcaaatatggtaaaactctaagtgtc
aaagtgatgactgatcctagtggaaaatccaaaggctttggctttgtgagttttgagaag
catgaagatgccaataaggcagttgaagaaatgaatggaaaagacatcaatggaaagatg
gtatttgtaggccgggcacagaagaaagttgaacgccaggctgaattaaaacggaaattt
gagcagctaaaacaggagagaatcagccgctaccagggggtgaatctctatattaagaac
ttggatgacaccattgatgatgaaaaattaaggaaggaattttctccttttggatcaatt
accagtgccaaggtgatgcttgaggatgggagaagtaaaggctttggctttgtctgcttc
tcttcacctgatgaggctactaaagcagtaacagaaatgaatgggcgcattgtgggctca
aagcccctatatgttgcacttgcacagaggaaagaagaaaggaaagcccacctaaccaat
cagtatatgcagcgtattgcaggaatgagagccctccctgccaacactatcatcaatcag
tttcagccaactcctgggggctacttcatgccagcagtgccccaggctcagaatagacct
ccttattatgctcccaatcagatagcccagatgagacccaatcccagatggcaacaaggt
ggaagacctcaaggcttccaaggagtaccaaacaccattcggcagtctgggccacgccct
gctcttcgacacctgactccaaccagtaatacccaggcttctcgagggctccctactaca
cctcagagagtgggggtgcccactgctgtgcaaaatttatctcctagaccctctgtagct
acccctgcacctcgagccgtccctccttacaaatatgctgcaaatgtccgaagtccccat
ccagccatccagcctttgcagacacctcaaccagcggtccatgtgcaaggccaggagccc
ttgacagcttccatgctagctgctgctcctccccaggaacagaagcagatgctaggagag
cgtttgttcccattgattcaaaccatgcacaataatttagcggggaagatcacaggtatg
ctgctagagatagataattcagaactgctgcacatgctggagtctccagaatccctccgt
tcaaaggtggaggaagccgtagcagtattacaagctcatcatgccaagaaggaagctgct
cagaaggtggccgtggttgctgctacctcttag
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