Gracilinanus agilis (agile gracile opossum): 123244449
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Entry
123244449 CDS
T07702
Symbol
PRPF8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
gas
Gracilinanus agilis (agile gracile opossum)
Pathway
gas03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gas00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123244449 (PRPF8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gas03041
]
123244449 (PRPF8)
Spliceosome [BR:
gas03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
123244449 (PRPF8)
Complex C
U5 SnRNP specific factors
123244449 (PRPF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
123244449
NCBI-ProteinID:
XP_044528883
LinkDB
All DBs
Position
4:complement(490373679..490390775)
Genome browser
AA seq
2335 aa
AA seq
DB search
MAGVFPYRGPGTPVPGPLAPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYISQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLRDSRKYVNGSTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRR
ALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAAGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATE
AAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLRTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
GQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCSFTP
GSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQASWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atggccggggtgtttccctacagagggccgggtacccctgtgcccggccctctggcacca
cttcccgactacatgtcagaggagaagcttcaggaaaaagcccgaaaatggcagcagtta
caagcaaagcgctatgcagagaagcggaaatttggatttgtagatgcacagaaggaagac
atgcctccagaacatgtcaggaagatcatccgagatcatggggacatgaccaaccggaaa
ttccgtcatgacaagcgagtctacctgggtgccctgaagtatatgcctcatgctgttctc
aagctcttggaaaacatgcccatgccatgggagcagattcgggatgtgcctgtcctgtac
cacatcactggagcgatctcctttgtaaatgagattccttgggtcatcgagcctgtctac
atctctcagtgggggtccatgtggatcatgatgcgtcgagagaagagggataggcggcac
ttcaagcggatgcgctttcccccatttgatgacgaagagccccccctggactatgcggac
aacatcctggatgtggagcctttggaggccattcaattggagctggaccctgaggaggat
gcccctgtgctggactggttctatgaccaccagcccctaagggacagcaggaagtatgtg
aatggctctacatatcagcgctggcagttcacactgcccatgatgtctactctctaccgc
ctggccaaccagctcttaactgaccttgtggatgacaactacttctacctgtttgacctg
aaggcctttttcacctccaaggccctcaacatggccatcccaggaggccctaaatttgag
ccactagtacgagacatcaaccttcaggatgaagactggaatgaatttaacgacattaac
aagatcatcatccgacaacctatcagaactgagtataagattgcttttccatacttgtac
aacaatctcccacaccacgtccacctcacttggtaccacactcccaatgttgtgttcatc
aaaacagaggaccctgacctcccagccttctactttgatcctttgatcaatcctatctcc
cacagacattctgtcaagagtcaagagcctttgccagatgatgatgaggagtttgagctc
cccgagtttgtggaacctttcctgaaggacacacccttatacacagacaacacggccaat
ggtatagcccttctgtgggcccccaggcccttcaaccttcgctctggtcgtacccgccgt
gccctggacatacctctggttaaaaactggtatcgggagcattgtcctgctgggcagcct
gtgaaggtgagggtctcctatcagaagctgctcaaatactatgtgctgaatgctcttaag
caccgaccccccaaggcccaaaagaagaggtatctcttcaggtcctttaaggccaccaag
ttcttccagtctaccaagctggactgggtggaggtggggcttcaggtttgtcgccagggc
tataacatgctcaacctcctcatccatcgcaagaacctcaactacttgcaccttgactat
aatttcaacctcaagcctgtcaagacccttaccactaaggaacggaagaaatcacgtttt
ggaaatgccttccacttgtgtcgggaggtgcttcgactgaccaagcttgtggtggacagc
cacgtacagtaccgcttgggcaacgtggatgccttccagctagcagatgggctgcagtat
atatttgcccatgtgggccaactgacaggaatgtaccgctacaagtacaaactgatgcgg
cagatccggatgtgtaaggacctgaagcacctgatctactatcgcttcaacacgggtcct
gtggggaagggtccaggctgtggtttctgggctgctggctggcgagtctggttgtttttt
atgcggggcatcactcctcttttggaacggtggctgggcaacctcctggcccggcagttt
gaaggtcgacactcaaagggggtggcaaagactgtgaccaagcagcgagtggaatctcac
tttgacttggagctccgggcagcggtgatgcatgacatcttggacatgatgcctgagggc
atcaaacagaacaaggcccggacaatcttgcagcacctcagtgaggcctggcgctgttgg
aaggccaacataccctggaaggttcctggattgccaacacccattgagaacatgatcctg
cgctatgtgaaggctaaagccgattggtggaccaacactgcccattacaaccgagagcgg
atccgtcgaggagccactgtggacaagactgtgtgtaagaaaaacttgggtcgtctcacg
cgtctttatctgaaggctgaacaggaacgtcaacacaattacttaaaggatggcccctat
attacagcagaagaagccgtggccgtctataccaccacagtgcactggctggagagccgc
agattctcccctatccccttccctccactctcctacaaacatgacaccaagctactcatc
ctggccctggaacggctcaaggaagcctatagtgtgaaatcacgtttgaaccagtcccag
agagaggagctgggcctgatcgagcaggcctatgacaacccccatgaggcgctatctcgc
atcaagcgtcacttacttacacagagagccttcaaggaggtgggcattgagtttatggac
ctgtacagtcacttggtacctgtttatgatgtggaacctctagaaaagatcacagacgct
tacttagaccagtacctgtggtatgaagctgacaaacgccggctcttcccaccctggatc
aaacctgctgacacagagccccctcctctgcttgtgtataagtggtgccaaggcatcaat
aacctgcaggatgtgtgggagacaagtgagggagagtgcaatgtcatgctggagtcacga
tttgagaagatgtatgagaagattgacctgacgctcctgaacaggcttctgagacttatt
gtcgaccacaacattgctgactacatgacggccaagaacaatgtggtcatcaactacaag
gacatgaaccatacaaattcttacggaatcattcggggactccagtttgcctccttcatt
gtgcagtactatgggctggtgatggaccttcttgtcttgggcctgcaccgggccagtgag
atggctgggcctcctcaaatgcccaatgactttcttagcttccaggatatagctacagag
gctgcccaccccatccgcctcttttgtcgctacattgaccgcatccacattttcttcagg
tttaccgcagatgaggcccgagacttgatccagcgctacctaactgagcaccctgacccc
aacaacgagaacattgtgggctacaacaataagaagtgctggcctcgggatgcccggatg
cgcctcatgaagcatgatgtgaacctgggccgggcagtgttctgggacatcaagaaccgc
ctgccacgctcagtgaccacagtgcagtgggagaacagctttgtgtcagtgtacagcaaa
gacaatcccaatctactcttcaatatgtgcggctttgagtgtcgcattctgcccaaatgc
cgcaccagctatgaggagttcacccacaaggatggggtctggaacctgcagaacgaggtc
actaaggagaggacagctcagtgcttcctgcgtgtggatgacgagtcaatgcagcgcttt
cacaatcgtgtgcgtcagatcctgatggcctccggttccaccaccttcaccaagattgtg
aataaatggaacacagcactcattgggctcatgacgtacttccgtgaggctgtggtgaac
acccaggagctgctggacttgctggtgaagtgtgagaacaagatccagacccgaatcaag
atcgggctcaactccaagatgcccagtcgcttccccccagttgtgttctatacccccaaa
gagcttggtggactgggcatgctgtccatgggccatgttctcatcccccagtctgacctc
aggtggtcaaagcagacagatgtaggcatcacccacttccggtcagggatgagccatgaa
gaagatcagctgattcctaacttgtaccgctacatccagccttgggagagtgagttcatt
gactctcagcgggtctgggccgagtatgcactcaagagacaagaggccattgcccagaac
aggcgcctgaccctggaggacctggaggattcatgggatcgaggcattccccggatcaat
accctgttccagaaggaccggcataccctggcttatgacaaaggctggcgtgtccgcact
gactttaaacagtaccaggtcctaaaacaaaatccattctggtggacacaccagcggcat
gatgggaagctctggaacctgaacaattatcgaacagacatgatccaggccctgggtggt
gtggaaggcatcctggagcacacgctcttcaagggcacttactttcctacttgggagggt
cttttctgggagaaggctagtggctttgaggagtcaatgaaatggaagaagctgaccaat
gcccagcggtctgggttgaaccagatccccaaccgtcgcttcaccctctggtggtcccct
accattaaccgagccaatgtatacgttggcttccaggtacagctggaccttactggcatc
ttcatgcatggcaagatccccacactgaagatctctctcattcagatattccgtgctcat
ttatggcagaagatccatgagagcattgtcatggatctgtgtcaggtatttgaccaggag
ttagatgcactggaaattgagacggtacaaaaggagacgattcaccccaggaagtcctat
aagatgaactcctcttgtgcagacattttgctttttgcctcctataaatggaatgtctcc
cggccctcactgctggctgactctaaggatgtaatggacagcaccaccactcagaagtat
tggattgacatccagctgcgttggggtgactatgattcccatgacatcgaacgctatgct
cgggccaagttcctggactataccacagacaacatgagtatctatccctcccccactggt
gtgctcattgccatcgacttagcatacaatttgcacagtgcctatggaaactggtttcct
ggtagcaagcctctgatccagcaagctatggccaagatcatgaaggcaaaccctgccctg
tatgtccttcgagagcggatacgtaaaggcttacagctgtactcttctgagcccactgag
ccctacctctcctcccagaactatggtgaactcttctctaatcagatcatctggtttgtg
gatgacaccaatgtctatagagtcaccatccacaagacctttgaaggcaacttgactacc
aagcccatcaatggggccatcttcatcttcaatccaagaacagggcagcttttcctgaag
attatccacacgtctgtgtgggctggacagaagcgtctgggtcagttggccaaatggaag
acggcagaagaagtagctgccctgatccgttctctgcccgtagaggaacaacccaagcag
atcattgtgaccagaaagggcatgttggacccattggaggtgcacttgctggacttcccc
aacattgtgatcaaaggctctgagctgcagttgcctttccaggcctgtctgaaagtggag
aaatttggggaccttatcctcaaggccaccgagccccagatggttctcttcaatctctat
gatgactggctcagaaccatatcatcctatacggccttttctcgactcattctgatcctt
cgtgctctccatgtgaacaacgatcgggccaaagtgatcctgaagccagacaagaccacc
atcacagagccccatcacatctggcccacgctgaccgatgaggagtggatcaaggtggaa
gtgcagctcaaggacctgatcctagctgattacggcaagaagaacaatgtgaacgtggcc
tccctaacacagtcagagatccgtgacatcatcctgggcatggagatctctgcaccttcc
cagcagcggcagcagattgccgagatcgaaaaacagaccaaggagcaatcccagctgaca
gcaacccagacccgaaccgtcaataagcacggagacgagatcatcacttccaccaccagc
aactacgagactcagaccttctcctccaagacagagtggagagtgagggccatctctgct
gccaacttacacctgcgcaccaaccacatctacgtctcatcagatgacatcaaagaaaca
ggctacacttacatccttcccaagaatgtactcaagaagttcatctgcatttctgatctg
agggcccagattgcaggctacctctatggagtgagccccccggataaccctcaagtgaag
gagatccgctgcattgtgatggtacctcagtggggcacccaccagacagtgcacctgcca
ggccagcttccccagcacgagtacctcaaggagatggagccccttggctggatccacact
cagcccaatgagtccccccagctctcgccccaggatgtcacgacccatgccaaggtcatg
gccgacaacccctcatgggatggtgagaagactatcatcatcacttgcagcttcactcca
ggctcttgtaccctgactgcctacaagctgactcccagcggctatgagtggggtcggcag
aacacagacaagggcaacaaccccaagggctacctgccctcccattatgagagggtgcag
atgctgctgtctgatcgcttccttggcttcttcatggtgcctgctcaggcgtcctggaac
tacaacttcatgggtgtgcgccatgaccccaacatgaagtacgagctgcagctggccaac
cccaaggagttctaccacgaagtgcaccggccgtcccacttcctcaacttcgcgctgctg
caggagggggaggtctactccgccgaccgcgaggatctctacgcctag
DBGET
integrated database retrieval system
