Gracilinanus agilis (agile gracile opossum): 123244450
Help
Entry
123244450 CDS
T07702
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
gas
Gracilinanus agilis (agile gracile opossum)
Pathway
gas03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gas00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123244450 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gas03019
]
123244450 (XAB2)
03041 Spliceosome [BR:
gas03041
]
123244450 (XAB2)
Messenger RNA biogenesis [BR:
gas03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
123244450 (XAB2)
Spliceosome [BR:
gas03041
]
Complex B
Other components
Prp19-related factors
123244450 (XAB2)
Complex C
123244450 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
Suf
TPR_8
TPR_19
TPR_15
TPR_16
ARM_TT21
TPR_MalT
ARM_TT21_C
TPR_1
RPN7
NRDE-2
Motif
Other DBs
NCBI-GeneID:
123244450
NCBI-ProteinID:
XP_044528887
LinkDB
All DBs
Position
1:738592811..738604150
Genome browser
AA seq
862 aa
AA seq
DB search
MPEVGDAASTEAKLKTRTERPDLFFEEEDLQYEEEILRNPFSVKCWFRYIEFKQSASQAV
LNLLYERALKELPGSYKLWYHYLKARRAQVKRRCVTDPAYEDVNNCHERALVFMHKMPRL
WLDYCQFLMEQGRITRTRRTFDRALRALPITQHSRIWPLYLRFVRSHPLPETAVRVYRRF
LKLSPESAEEYIEYLRSIDRLDEAAQRLATVVNDERFISKEGKSNYQLWHELCDLISQNP
DKVQSLNVGAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIQTVMTVRDF
TQVFDSYAQFEESMIAAKMETTSELGREEEDDIDLELRLARFEQLISRRPLLLNSVLLRQ
NPHHVHEWHKRVALHQGRPREVINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLD
DARTILEKATKVNFKQVEDLASVWCEYGEMELRHDNYDQALRLLRKATALPARRAEYFDG
SEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYERILDLRIATPQIVINYAMFLEEHS
YFEESFKAYERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYA
KTLYLLYARLEEEWGLARHAMAVYERATRAVEPSQQHEMFNIYIKRAAEIYGVTHTRSIY
QKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGTFWQTWKDFEI
RHGNEDTIREMLRIRRSVQATYNTQVNFMASQMLKVYSNATGTVSDLAPGQSGMDDMKLL
EHRAEQLAAEAERDQPSRSQGKILFVRSDASRTELAELAQQANPEEIEIGEEEEEEEELQ
PNEVPLEQQSVPATVFGSLKED
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaggttggggatgcagcctcaaccgaggcaaagctgaagactcggactgagagg
cccgatctctttttcgaagaggaggatttgcaatatgaggaagaaatccttcgcaaccct
ttctccgtcaagtgttggtttcgatacatcgagttcaagcagagtgcgtcgcaggcagtg
ctcaacctgctctatgagcgagccctcaaggagctgccagggagttacaagctgtggtac
cattacctaaaagcccgccgagcccaggtgaagcgtcgctgtgtgactgaccctgcctat
gaggatgtcaacaactgccatgaacgggccttggttttcatgcacaagatgccgcgcctg
tggttggactactgccagttcttgatggagcaaggccgtattactcggacccggcgcacc
tttgaccgtgcgctgagggctttgcctatcactcagcactcgcggatctggcccctctac
ctacgctttgtacgctctcatcctctgcctgagactgcggtgcgagtgtaccgccgcttc
ctcaagctgagtcctgagagtgcagaggaatacattgagtacctgcgctccatcgaccgg
ctggacgaggcagctcagcgcctggcaactgtggtcaatgatgaaagatttatctccaag
gaaggaaagtccaattaccagctctggcatgaactgtgtgacctgatctcccaaaaccca
gacaaagtgcagtccctgaatgtgggggccatcatccggggggggctcacccgctttaca
gaccagctcggcaaactctggtgctccctggcggactactacatccgaagcggacatttc
gagaaggcccgagacgtgtatgaggaggcgatccagacagtgatgaccgtacgggacttc
acccaggtgtttgacagctatgcccagtttgaggaaagcatgatcgcagccaagatggaa
acaacttcagagctggggcgggaggaagaagatgacatagacctggagcttcgcctggcc
cgctttgagcagctcattagccgccggcccctcctcctcaacagcgtcctgctgcgccag
aacccacaccacgtgcatgagtggcacaagcgagtggccctgcatcagggccggcccaga
gaggtcatcaatacatacacagaggctgtgcagactgtggatcccttcaaggccacgggc
aaaccccacacgttatgggtcgcctttgccaagttctatgaggataacgggcagctggat
gatgcccgcaccatcctggagaaggccaccaaagtgaacttcaaacaggtggaggatttg
gccagtgtgtggtgtgagtatggtgagatggagctgagacacgacaactatgaccaggcc
ctgcgactgctgcggaaggcaactgccctgcccgcccgccgggctgagtactttgatggt
tcggaacctgtgcagaatcgggtctacaagtccttgaaggtgtggtctatgctggctgac
cttgaggagagtctgggcaccttccagtccaccaaggccgtgtacgagcggatcctggac
ctgcgcatcgccactccccagatcgtcatcaattacgccatgttcctggaggagcacagc
tacttcgaggagagcttcaaggcctacgagaggggtatctcgctgtttaagtggcccaac
gtgtcagacatctggagcacatacctgaccaagtttattgctcgctatggaggccgcaag
ctggagcgggcccgggacctgtttgagcaggcactggatggctgccccccaaaatatgcc
aaaactctgtacctgctatacgcccggctggaggaagaatgggggcttgcccgccatgcc
atggctgtgtatgagcgtgccacccgtgctgtggagccctcccagcaacatgaaatgttc
aacatctacatcaaacgtgccgctgagatctatggtgtcacccatacccgcagcatctac
cagaaagccattgaggtgctgtcggacgagcacgcgcgagaaatgtgtctccgttttgcc
gacatggagtgtaagctgggagagattgaccgggcgcgggccatctacagcttctgctcc
cagatctgcgaccccaggaccacggggacgttctggcagacgtggaaggactttgagatc
cgccatggcaatgaggacaccatccgcgagatgctccgcatccggcgaagcgttcaggcc
acgtacaatacccaagtcaacttcatggcctcccagatgctgaaggtgtacagcaatgcc
acgggcactgtgtccgacctggcccctggacagagcgggatggacgacatgaagctgctg
gagcatcgggcggaacagctggcggccgaggcagagcgggaccagccgtcgcgctcacag
ggcaagatcctctttgtcaggagcgacgcctcccgcacggagctggctgaactggcccag
caggccaaccctgaggagatcgagataggggaggaggaggaagaggaggaagagctgcag
cccaatgaggtgccgctggagcagcagagcgtgccagccaccgtcttcgggagcctgaaa
gaagactga
DBGET
integrated database retrieval system
