Gracilinanus agilis (agile gracile opossum): 123245049
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Entry
123245049 CDS
T07702
Symbol
DHX16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
gas
Gracilinanus agilis (agile gracile opossum)
Pathway
gas03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gas00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123245049 (DHX16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gas03041
]
123245049 (DHX16)
Enzymes [BR:
gas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123245049 (DHX16)
Spliceosome [BR:
gas03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
123245049 (DHX16)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
WHD_HA2
AAA_22
AAA_19
AAA_30
nSTAND3
Flavi_DEAD
SRP54
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
123245049
NCBI-ProteinID:
XP_044529695
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All DBs
Position
4:complement(256074600..256090624)
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AA seq
1043 aa
AA seq
DB search
MATPAGLERWVQDELHSVLGLSERHVAQFLIGTAQRCGTADEFVERLRDTGTLDLSGPAR
DFALRLWGKVPRKAVVERPARAAEREALALLEKNRSYQLLEESEESDGEAQGRGRSGFQK
KNKKRKHLRKKTQEEEEEERDSEGDKKKARMNETNKEQKPESEDEWERSERERLQDLEER
DAFAERVRKRDKERTRNILERSDKKAYEEAQKRLKMAEEDQKAMVPELRKKSRREYLAKR
EREKLEDLEAELADEEFLFGDVELSHTERQELKYKKRVRDLAREYRAAGEQEKLEATTRY
HMPEETRGQPARGVELVEEESGAPGEEQRRWEEARLGAAALRFGAKDAAPSEPKYQLVLE
EEETIEFVRATRLQGDEEPSAPSPSSGDQQKESIRAVRHSLPVFPFRNDLLDAIANHQVL
IIEGETGSGKTTQIPQYLFEEGYTQKGMKIACTQPRRVAAMSVAARVAREMGVKLGNEVG
YSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLGSYSVVMVDEAHERTLHTDILFGLIKD
VARFRPELKVLVASATLDTARFSAFFDDAPVFRIPGRRFPVDIFYTKAPEADYLEACVVS
VLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQAR
IFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKAS
ANQRAGRAGRVAAGKCFRLYTAWAYQHELEETTVPEIQRTSLGNVVLLLKSLGIHDLMHF
DFLDPPPYETLLLALEQLYALGALNHLGELTTPGRKMAELPVDPMLSKMILASEKYGCSE
EILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPGGDHLVLLNVYTQWVESGYSSQWC
YENFVQLRSLRRARDVREQLEGLLERVEVGLSSCQGDYTRVRKAITAGYFYHTARLTRSG
YRTVKQQQTVFIHPNSSLFEEQPRWLLYHELVLTTKEFMRQVLEIESGWLLEVAPHYYKA
RELEDPNAKKMPKKVGKTREELG
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccccggccgggttggagcgctgggtgcaggacgagcttcactcggtactgggc
ctgagcgagcggcacgtcgcacagttcctcatcggcaccgcgcaacgctgcggcacagcc
gatgagtttgtggagagactgcgagacactggcaccttggatctcagcggaccggctcga
gacttcgcgctgaggctctggggcaaggttccaagaaaggcagttgtggaaagaccagcc
agggcagcagaacgtgaggctttagctctgctagagaagaaccgttcataccagcttttg
gaggaaagtgaagagagtgatggggaagcccagggccgagggcggagtgggttccaaaag
aagaacaagaaacggaaacatcttaggaagaagacccaggaagaggaggaggaagaacga
gattcagaaggggacaagaagaaggcaaggatgaatgagactaacaaggaacagaagcca
gagtcagaagatgaatgggaacgaagtgagagggagcggcttcaggacctggaggaacgt
gatgcctttgctgaacgagttcgaaagcgggacaaggagcggacccgaaacattttggag
cggtcagacaagaaggcctatgaggaggcccagaagcgcctgaagatggctgaagaagac
cagaaagcaatggtacctgagcttcgaaagaaatcaaggagggagtaccttgcaaagcgg
gagcgggagaaactggaggatctagaagcagagctggcagatgaggaatttctttttgga
gatgtggagctgagccacactgagcggcaggaacttaagtataagaagagagtacgggat
ctggcccgggagtaccgggcagctggggagcaggagaagctggaggccacaactcgatac
catatgccagaagagactcgtggacagccagctcgtggggtagagctggtggaagaagag
tcaggagcccctggagaggagcaaaggcgctgggaggaggcccgtttaggggcagctgcc
ctccggtttggagccaaggatgctgccccctctgagcccaagtatcaactggtgttggaa
gaggaggagactattgaatttgtccgagccacacggcttcagggtgatgaggaaccatca
gctccatccccttcctctggggaccaacagaaggaatcaattagggctgtgcgacatagc
ctccctgtatttccattccgaaatgacctccttgatgccattgctaaccatcaggtcctc
atcattgagggtgaaacagggtcagggaagacaacacagatcccccagtacctctttgag
gagggttacacacagaagggaatgaagattgcctgtacccagcctcggagagtggcagcc
atgagtgtggcagcgagagtagcccgggagatgggggtcaagctgggaaatgaggttggc
tatagtatccgttttgaggactgtacttcagaacggactgttctcagatatatgactgat
gggatgctacttcgagagttcctttctgagcctgaccttggaagttacagtgtggtgatg
gtggatgaagctcatgaacggactctacacacagacatactgtttgggttgataaaggat
gttgctcgattccgcccagaactcaaggttctggtggcttctgccaccctggatactgcc
cgtttctcagccttcttcgatgatgcccctgttttccggatccctggccgcaggtttcct
gttgacatcttctataccaaggctccggaggcagattacttagaagcctgtgtggtgtct
gtgctgcagatccatgtcactcagccccctggggatatcctggtatttctgactggacag
gaagagattgaagcagcttgtgagatgctacaggatcgctgccgtcgtttgggctccaag
atccgggagctactggtgctgcccatttatgcaaatctgccttctgacatgcaagctcga
atcttccagccaacaccccctggggcacgaaaggtggtggtggcaacaaacattgcagag
acatcattgaccattgaaggcatcatttatgtcctggaccctggtttctgcaaacaaaag
agctacaaccccagaactggcatggaatcccttactgtcacaccctgtagcaaggcctca
gctaatcagagagctggccgtgcaggtcgggtagctgcagggaagtgcttccgcctctat
acagcctgggcctatcagcatgagctagaggagaccacggtgccagaaatccagaggacc
agcttgggcaacgttgtcctgttactaaagagtctgggaatccatgatttaatgcacttt
gactttctggatcctccaccctatgagaccctgctgctggctctagaacagttgtatgct
ctgggagcactaaaccacctaggggagctcaccacgccgggccgaaaaatggcagaattg
cctgtggaccctatgttatctaagatgattttggcatctgagaagtatggctgctcagag
gagattctcacagtggctgccatgctatcagtcaataattccatcttttaccgtcccaag
gacaaagttgtccatgctgataatgcccgtgttaacttcttcttgcctggtggggaccac
ttggtgctgctaaatgtttatacacagtgggttgagagcggctattcttcccagtggtgc
tatgaaaactttgtgcaactgcgctccttgcgccgagcacgagacgtgcgagaacagcta
gaggggctcctggaacgggtagaagttgggctcagctcctgtcagggggactatactcga
gttcgtaaggccatcactgctggctatttctaccacacagcacggctgacccgaagtgga
taccgaactgtgaaacaacaacagactgtcttcattcaccctaattcctctctttttgag
gagcagccacgttggctactctaccatgaacttgtcttgacaaccaaggagtttatgaga
caggtactagaaattgagagtggttggctccttgaggtagctccccactactacaaagcc
cgagagctagaagatcctaatgccaagaaaatgcccaagaaagttggcaagactcgggaa
gaactgggttaa
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