Gracilinanus agilis (agile gracile opossum): 123245176
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Entry
123245176 CDS
T07702
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
gas
Gracilinanus agilis (agile gracile opossum)
Pathway
gas03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gas00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123245176 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gas03041
]
123245176 (DDX42)
Enzymes [BR:
gas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123245176 (DDX42)
Spliceosome [BR:
gas03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
123245176 (DDX42)
Complex B
123245176 (DDX42)
Complex C
U2 SnRNP specific factors
123245176 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
123245176
NCBI-ProteinID:
XP_044529872
LinkDB
All DBs
Position
4:206309000..206355924
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AA seq
935 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAIAAGKKEEPKLPQQSHSAFGATSSSAGFGKSAPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKSADSDSDDDPLEAFM
AEVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGMVQEEEEDN
LEYDSDGNPIAPSKKVIDPLPPIDHSEIDYPPFEKNFYNEHEEITSLTPQQVIDLRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELDPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANADELANNLRQEGHNLGLLHGDMDQSERNKV
ISDFKKKGIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNMEGANQHVTKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENTDRGNNSNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSNQ
KAGSSAAGASGWTSAGSLNSVPSNSAQQGHANSDSPIATATKSIPGFASAGNLSSVPGGY
SPTGTQALNNTASGSNNREGIGGGSGNGNRERYPENRGSSRHSHGDSGNRHGDGPRHGDG
RHGDGYRHPESSGRHGDGHRHGENRHGSGGRHGESRVGSDGRNGESRKEACGRESKTDGR
TDTRTDSKTDLKTDKTADGFAVPEPPKRKKSRWDS
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaacaaaggtggccctggcaccaagaggggatttgggtttggtggatttgcc
attgctgctggaaaaaaggaagaaccgaagctcccgcaacagtctcatagtgcctttggg
gcaaccagctcttcagcagggtttggaaagtcagctccaccgcagctcccttctttctat
aaaattggatctaagcgagcaaattttgatgaagaaaatgcttattttgaagatgaagaa
gaagactctagcaatgttgatttgccttacattcctgctgaaaattcacctacccgccag
caattccattccaagtcagcagactctgacagtgatgatgatcccctggaagcattcatg
gctgaagtagaggatcaagctgctcgagacatgaagagacttgaagaaaaagacaaggaa
agaaaaaatgtgaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcgatacatggcagaaaaccctactgctggtatggttcaggaagaggaagaagataac
ctggaatatgacagtgatggaaatcccattgcaccctccaaaaaagtcattgatcctctt
cctcccattgaccattcagagattgactacccaccatttgaaaaaaatttctacaatgag
catgaagagataactagccttaccccacagcaggtgatagatctccgacataaactcaat
cttcgggtctctggtgctgctccacccagaccaggaagtagttttgctcactttggattt
gatgagcaacttatgcatcagattcggaaatctgagtacacacagcctactccaatccaa
tgtcagggtgttccagtggcacttagtgggagagacatgattggcattgccaaaacaggt
agtggaaaaactgcagcttttatctggcccatgctgattcatatcatggatcaaaaggaa
ttggatccaggagatggaccaattgcagtaattgtgtgccctaccagggagctttgtcag
cagattcatgcagaatgcaagcggtttggcaaagcctacaatcttcgatctgtggctgtc
tatggaggaggaagcatgtgggagcaggccaaagcccttcaagaaggggctgagattgtt
gtttgtactccaggtcggctgattgatcacgtgaagaagaaagctacaaatctccagaga
gtctcttaccttgtatttgatgaagcagatcgaatgtttgacatgggttttgaatatcag
gtgcgatccatagccagtcatgtccgtcctgatagacagactcttttatttagcgcaact
ttccggaaaaaaattgaaaaactggcccgagacatcctcattgacccaatccgagtggta
cagggagacattggagaggcaaatgaagatgtgacccagattgtagaaatccttcactct
ggacccagtaaatggaactggctcactcggcgtctggtagaattcacctcttcaggaagt
gttctcttgtttgtaactaagaaagctaatgctgatgaactagctaacaacctcagacag
gaaggacacaacctaggactgctccatggtgacatggatcaaagtgaaaggaacaaggtc
atttctgattttaagaaaaagggcatcccggttcttgtggctacagatgttgcagcccgt
ggtttggacattccttcaattaagactgtcatcaactatgatgtggctcgggacattgat
acccatacacacagaattggtcggacaggacgagctggcgagaagggtgtggcatatacg
cttttgactcccaaggacagcaattttgctggtgaccttgtcaggaacatggaaggggcc
aatcaacatgttaccaaggaacttctggacctagcaatgcagaatgcctggtttcggaaa
tctcgattcaaaggaggaaaagggaaaaagctgaacattggtggtggaggcctaggctac
agagaacgacctgggctaggctccgagaacacagatcgtggaaacaacagcaacgtgatg
agtaactatgaggcctacaagccctccacaggggccatgggagaccgcctgactgcaatg
aaagctgcttttcagtcgcagtacaagagccattttgtcgctgccagtttaagcaaccag
aaggctgggagctctgctgctggggcaagtgggtggacaagtgcagggagcttgaattcc
gtcccaagtaattcagcccagcagggccatgccaattctgacagccccattgccacagcc
accaagagtatcccaggctttgccagtgctgggaaccttagcagtgttccaggagggtac
tcacctactggaactcaggctctcaacaacacagcctcagggagcaacaaccgagaagga
attggtggtggcagtggtaatggaaatagagagcgatacccagagaacagaggtagtagt
cgccatagccatggagatagtggtaatcgccatggtgatggtccccgtcatggagatggc
cggcatggcgatggataccgccatccagaaagcagtggccggcatggagatggtcatcgg
catggagagaacagacatgggagtggtggccgacatggggaaagccgggttgggagtgat
ggtcggaatggcgagagcaggaaagaggcttgtggtcgtgaaagcaagacagatggcagg
acggacaccaggacggacagcaagacagacttgaagacagacaagacagcagatggcttt
gctgtgcctgagccacccaaacgcaagaagagtcgatgggacagttag
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