Gracilinanus agilis (agile gracile opossum): 123245200
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Entry
123245200 CDS
T07702
Symbol
HELZ
Name
(RefSeq) probable helicase with zinc finger domain isoform X1
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
gas
Gracilinanus agilis (agile gracile opossum)
Brite
KEGG Orthology (KO) [BR:
gas00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gas03019
]
123245200 (HELZ)
Messenger RNA biogenesis [BR:
gas03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
123245200 (HELZ)
3'-5' decay
Other 3'-5' decay factors
123245200 (HELZ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
zf-CCCH
AAA_19
AAA_30
UvrD-helicase
ResIII
PhoH
PAM2
zf_CCCH_4
Mov-10_helical
zf-CCCH_4
AAA_22
AAA_16
AAA_7
AAA_5
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
123245200
NCBI-ProteinID:
XP_044529898
LinkDB
All DBs
Position
4:complement(223181297..223378007)
Genome browser
AA seq
1938 aa
AA seq
DB search
MADRRPEKSCEQACESLKRQDYEVAVRHCTEALLSLGQYSLANFTETCPLEVERIKIESL
LYRIASFLQLKNYGQADEDCRHVLGEGLAKGDGSFQAVLCCMHLKGKLQVVSNVLSKSLM
GESLNGMATKDLTRLKTLLTETETATSKVPSEYLMEDLEEGSPNGWHFRPPPRGITSSEE
YTLCKRFLEQGICRYGAQCTSAHSQEELTEWQKRYASRLIKLKQQKESKQFSGSYMETLI
EKWMNSLSPEKVLSECVEGVWVEHNPELSLTVNTKKSHQTWTFALTCKPARMLYRVALLY
DAHRPHFSIIGISAGDSTTQVSQEVPENCQEWIGGKMAQNGLDHYVYKVGVAFNTEIFGT
FRQTIVFDFGLEPVLMQRVMIDAASTEDLEYLMHARQQLLTTAKRWDSTSKTIIDFEPNE
TTDLEKSLLIRFQIPLSADQLFTQSVLDKSLTKTNYQSRLHDLLYIEEIAQYKEVSKFNI
KVQLQIVASFMLTGVSGGAKYAQNGQLFGRFKLTETLSEDTLAGRLVMTKVNAVYLLPIT
KEKLVQTQGTKEKVFEAAIEEKTKDYIFLRISRECCEELNLRADCEMQVELQFQLNRLPL
CEMHYALERIRDNGILFPDVSMTPTIPWSPNRQWDEQLDPRLNAKQKEAVLAITTPLSIQ
LPPVLIIGPYGTGKTFTLAQAVKHILQQQDTRILICTHSNSAADLYIKDYLHPYVEAGNP
QARPLRVYFRNRWVKTVHPVVHQYCLISSTHSTFQMPQKEDILKQRVVVVTLNTSQYLCQ
LDLEPGFFTHILLDEAAQAMECETIMPLALANQNTRIVLAGDHMQLSPFVYSEFARERNL
HVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEGKLMASGKQPAHKDFYPL
TFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQV
FRIRAELRKKRLSDVNVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIKRKEHLLEDST
EDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSIGRCRKFWERFIALCHDNKSLHGI
TFEQIKMQLEALELKKTYVLNPLAPEFIPRALRHQHLGNTIKQQQSPPKGKGHNNNQNEH
FQNDGIVQTNPSVLIGNPIRAYTPPSPLGPHPNMGKSPSPVQRIDPHSGTSILYVPALYG
GNVVMSVPLPVPWTGYQGRFAVDPRIITHQAAMAYNMNLLQTHGRGSPIPYGLGHHSPVS
VGQQQIQQQEKDQHEQNRNGKNDPNPGPEVNKIRTPEKKPLDSKQNDLDSNTQNRSPEAR
PGFAYPNPKFHRKDNLNARHLNLHLTAPHAQYAVPHRHYQHLSQLPRQAFPAQQPQNLGQ
QQNHFPEQPTQIPPQPQPNQAVQQHNHLNQQTQQQPSQLSPTYQAGPNHSFFNNAVSHRP
HSPAVDSMISEQHPTPMHQEVNPLRSIAQHNPMIPSHLNNFSEENPPGLPLGEALERIHG
NVALEALRQQQARIQQWSEHNAYLTQGSLPYAHYHHPHLQHLSQPPAGLHQHPIRANWKF
ATNAEDEAEATHSRFQDLIRELAHHDQSETRELTEMPPPQSRLLQYRQVQTRSPPANPSS
SSNSNHSGHFSNFSDIRDFEMANNPGFQQHPPPQIYNPSFSIPSENLTPPPLKYLPPDGS
WTFANLHQNHLMGQGFHYSIPPLPHRPQQNPFIQIQNQHVVGQEPFHPLSSRVVSASSLH
SLEEYEPRGPGRPLYQRRISSSSVPPCSEELNTPQDSLAQCKEHQDHNNQSSFNFSSPEL
WVNTTSSAPHQNIPCNGSSRTAPPRELLAPSKPLKSSEDHLKSENLQLSNSFNYSILQHL
GQFPPLMPNKQIVESNSNSQPSSGGNKPTMSYASALRAPPKPKPPPEQAKKKSDPLSLFQ
ELSLGRSSGSNGFYSYFK
NT seq
5817 nt
NT seq
+upstream
nt +downstream
nt
atggcagacagaagacctgaaaagtcatgtgaacaagcatgtgaatctcttaaaagacag
gactatgaagtggcagtgagacattgcacagaggcccttctttcccttggccagtattct
ttggcaaacttcacagagacatgcccattggaagtagaacgcataaaaattgagagtctt
ctgtatagaattgcctcattcttacaacttaagaactatggacaagctgatgaagattgt
aggcatgtgttgggagaaggattggccaagggagatggctcatttcaagcagtgctttgt
tgcatgcatcttaaaggaaagctccaagttgtctctaacgttctttccaaatcactgatg
ggagagtctctgaatggaatggcaacaaaagatttgacgagactaaagacacttctcact
gaaacagagacagcaactagtaaagtcccatctgaatatctcatggaagacttggaagaa
ggttctccgaatggctggcatttccgccctccacctagaggaatcaccagcagtgaggag
tatactttgtgtaaaagatttctagagcaaggaatatgtaggtatggtgcccagtgtaca
tcagcccattcccaggaagagctaactgaatggcagaaaagatatgcgtcaagactgata
aaattgaaacagcagaaagaaagcaaacagttttctggaagttacatggaaaccttgata
gagaaatggatgaattcactatctcctgagaaagtgcttagtgaatgtgtagaaggtgtg
tgggtggaacataatccagaactatctcttactgttaacaccaaaaagtcgcatcaaaca
tggacatttgctctcacttgtaagcctgcaagaatgttgtatcgagtagcactgctttat
gatgctcatcgtcctcattttagtatcattggaatatctgctggagatagtactacccaa
gtatcacaagaagtcccagaaaactgtcaagaatggataggaggaaagatggcccaaaat
ggattagatcattatgtttataaagttggggtagcatttaacacagaaatatttggaact
tttcgccaaaccatagttttcgactttggattagaaccagtgctcatgcagagagtaatg
atcgatgctgcttctacagaagatcttgaatacctaatgcatgcaaggcaacagttacta
acgactgcaaagcgctgggattccacttctaagactattatagatttcgagcctaatgaa
actactgatttggagaaaagccttcttattagattccaaattcctctttctgctgatcag
ctatttacacaatctgttttggacaaatcattgacaaagaccaattatcagtcacggtta
catgacttgctttatattgaggaaatagcacaatataaagaagttagcaagtttaacatt
aaagtgcaattgcagattgtagcaagcttcatgctcactggtgtttctggaggtgcaaag
tatgctcagaatggtcaactttttggtcgctttaagctcactgaaactctttctgaagac
actttggctggaagactggtgatgaccaaagtcaatgctgtttatttattgccaatcact
aaagagaaattagtgcagacccagggaaccaaagaaaaggtttttgaagcagctattgaa
gaaaaaacaaaagactatattttcttgaggatatccagggaatgctgtgaagagcttaat
cttcgagctgattgtgaaatgcaggtggaacttcagtttcaattaaatcgattaccactc
tgtgaaatgcattatgctttggagaggatcagagacaacggtattctgtttccagatgtt
agcatgactcctaccataccttggagtcctaacaggcaatgggatgagcagttggatcct
cggctaaatgcaaaacagaaagaggctgttctggctattaccaccccactttcaatacag
ctgcctcctgttcttatcattggtccctatgggacaggcaaaaccttcactctagctcag
gcagtcaagcacattctccaacaacaggatactaggattctcatttgcacccattctaat
agtgctgctgatctctacataaaggattatttacatccatatgtagaagcaggcaatccc
caggcgagacctctcagggtatatttcagaaatcgctgggtaaagactgtccacccagtt
gtacatcagtactgtttgatctcaagcacacattccacctttcagatgccacagaaggaa
gacattcttaaacaacgagtagtagttgttacattgaacacttcacagtacctttgtcaa
ctggatcttgaacctgggttttttacacacattctattggatgaagctgcgcaggccatg
gagtgtgaaaccattatgcctcttgcattagcaaatcaaaacacaaggatcgttttggct
ggagaccatatgcaacttagtccgtttgtctacagtgaatttgccagggaaagaaacctt
catgtttctttacttgatcgactctatgagcattaccctgcagaatttccatgccgaatc
ctcctgtgtgagaattatcgttcccatgaagctatcatcaattatacatctgagctcttc
tatgaggggaagctgatggcaagtggaaaacagccagcacacaaagatttttatccatta
accttctttacagcacgtggagaagatgtacaggaaaaaaatagtacagctttttataat
aatgcagaggtatttgaagtggtagaacgtgtagaagagttaaggagaaaatggcctgta
gcttggggaaagttagatgatggaagtattggtgttgttactccttatgctgatcaagtg
ttcagaatccgagcagaacttcgaaaaaagagattatctgatgtcaatgtggaaagagta
ctcaatgttcagggaaagcagtttagggttttgtttctgagtacggtacgcacacggcac
acttgcaaacataaacaaaccccaattaaaaggaaagagcatctattagaagattcaaca
gaagatttggattatggttttttgtccaactacaaacttctcaacactgccataacaaga
gcacagtccttggtagctgtggtgggtgatcctattgcattgtgctcaattggaagatgc
aggaaattttgggagcggtttattgccctgtgtcatgataacaaaagcctacatggtatc
acttttgaacagattaaaatgcagttagaggctttggagctcaagaaaacatatgtcttg
aatccacttgctcctgaatttatccctcgggctctaagacatcagcatttgggaaatacc
atcaaacagcaacagtcaccacccaagggaaaaggccataataataaccagaatgaacat
ttccagaatgatggaattgtccaaaccaatccttctgtactcattggcaatcctattaga
gcatatactcctccttcccctcttggaccccacccaaatatgggaaagtctcccagtcct
gttcaaaggatagatcctcacagtgggactagtattctttatgtacctgctctctatgga
ggaaatgtggttatgtctgtgcctttaccggtaccatggacagggtaccagggtaggttt
gcagttgaccctcgaatcattacacatcaggcagccatggcatataatatgaacctgtta
cagacacatggacggggatctcctataccatatggccttggacatcattcaccagttagt
gtagggcaacaacaaattcagcaacaggaaaaggatcaacatgaacaaaatcgaaatggt
aaaaatgatcctaatcctggacctgaagtaaacaaaattcgcactccagagaaaaagcct
ttagactccaaacagaatgatttagattcaaatacacagaaccgaagtccagaagctcgt
cctggttttgcttatcctaatcccaaatttcatcgaaaagataatctcaatgcgagacat
ctaaaccttcatcttactgctccccatgcacaatatgcagtccctcatcgccactatcag
cacttatcccagctaccaagacaagcatttccagctcaacaacctcaaaatttaggtcag
cagcagaatcatttccctgagcaaccaactcaaataccacctcaaccacaaccaaaccaa
gcagtccagcagcataaccacttgaatcaacaaactcagcagcaaccctctcagctatct
cctacatatcaagcaggccccaaccattccttctttaataatgcagtctctcatcgacca
cattctcctgctgtagattcaatgatatctgaacagcaccctactcctatgcatcaagaa
gttaaccctttgagatccattgcacaacacaacccaatgataccctctcacttgaataat
ttcagtgaagaaaatcctccagggttaccactaggggaagctttagaacgtatacatgga
aatgtggccttagaagcattaaggcaacagcaagcaagaattcagcaatggagtgagcat
aatgcctatctcactcaaggcagtcttccatatgcacactatcaccaccctcacctacag
catctttcccaaccaccagcaggattacatcaacatccaattagggcaaactggaaattt
gctactaatgcagaagatgaagcagaagcaacacattcaaggtttcaagacttaatcaga
gaactggctcatcatgatcaaagtgaaacacgggagctaactgaaatgccaccacctcag
tcaagacttttgcaatatagacaagttcaaactagaagcccaccagcaaatccttcttct
tcatccaattcaaatcacagtggccacttttctaacttcagtgacatcagagactttgaa
atggccaacaatccaggatttcagcagcatccgccaccccaaatatataacccctccttc
tcaataccatctgaaaaccttacccctcctcctttgaaatatctgccaccagatggatcc
tggacctttgctaatttacatcaaaatcatttaatgggacagggttttcactatagcata
ccaccattaccccacagaccacaacaaaaccctttcatacaaattcagaatcaacatgtt
gttggtcaggagccatttcacccactatcatctcgagtggtatctgcttcttctctccac
agcttagaagagtatgaaccacgaggaccaggcaggccattgtaccaaagaagaatttca
tctagttcagtaccgccttgttctgaagagttaaatactcctcaagacagtcttgctcag
tgtaaagagcatcaggaccataataaccaatcttctttcaacttttcatcaccggagttg
tgggtaaataccacctcatctgctccacatcagaacattccatgcaatggatctagcaga
acagccccacccagagaattgttagctccatcaaagcccttgaaatcctctgaggatcac
ctgaaatctgaaaaccttcagctgtccaattccttcaactacagcatattgcagcatcta
ggccaattcccacccctcatgcccaacaagcagattgtggaatcaaacagcaacagccag
ccaagttctggggggaacaaacctactatgtcctatgcaagtgctctacgggcgcctcca
aagcccaaacccccacctgaacaggcaaagaaaaagagtgaccctttgtctctgtttcag
gaacttagcttaggtagatcatcaggtagcaatggcttttactcgtattttaaataa
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integrated database retrieval system
