Gracilinanus agilis (agile gracile opossum): 123246316
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Entry
123246316 CDS
T07702
Symbol
POLR2A
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
gas
Gracilinanus agilis (agile gracile opossum)
Pathway
gas03020
RNA polymerase
gas03420
Nucleotide excision repair
gas05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
gas00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
123246316 (POLR2A)
09124 Replication and repair
03420 Nucleotide excision repair
123246316 (POLR2A)
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
123246316 (POLR2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gas03021
]
123246316 (POLR2A)
03400 DNA repair and recombination proteins [BR:
gas03400
]
123246316 (POLR2A)
Enzymes [BR:
gas01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
123246316 (POLR2A)
Transcription machinery [BR:
gas03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
123246316 (POLR2A)
DNA repair and recombination proteins [BR:
gas03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
123246316 (POLR2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
123246316
NCBI-ProteinID:
XP_044531163
LinkDB
All DBs
Position
4:complement(250422938..250456327)
Genome browser
AA seq
1907 aa
AA seq
DB search
MHGGGPPSGDSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDP
RQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVD
SNNPKIKDILGKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKG
HGGCGRYQPRIRRTGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEP
RYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAA
HVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVD
FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII
RDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS
TFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQD
TLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIVPGHI
NCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEM
GHDTTRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKA
HNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKIN
ISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHA
MGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGES
VEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEELVKDVLSNAHIQNELEREFERMR
EDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVDGVKELSKKL
VIVNGEDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAI
AHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLT
VFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMP
DFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIR
IMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKI
IITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALER
ELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLM
EAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTG
MFFGSAPSPMGGMSPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPG
YSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSP
SYSPTSPSYPPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPS
YSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPT
SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY
SPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEEN
NT seq
5724 nt
NT seq
+upstream
nt +downstream
nt
atgcacggtgggggtccaccctctggggatagcgcatgcccactacgaactatcaagcgc
gtgcaatttggagtcctcagtccagatgaactgaaacggatgtctgtgacagaaggtggt
atcaagtaccctgagacaacagagggggggcgccccaagcttgggggactgatggatcct
aggcaaggagtcattgagcgaacaggccgctgtcagacatgtgcagggaacatgactgaa
tgtcctggccactttggacacattgagctggctaagcctgtgttccatgtgggtttcttg
gtgaagacaatgaaagttctgcgctgtgtctgcttcttctgttccaagttgcttgtggac
tcaaacaatccaaaaatcaaagatatactgggtaagtcaaaaggacaaccaaagaaacga
ctcacccacgtctatgacctctgcaaaggcaagaatatttgcgagggaggtgaggaaatg
gacaacaagtttggggttgagcagcctgaaggtgatgaggatctaaccaaagaaaagggc
catggtggatgtggaagataccagcctcggattcggcgcacaggattggaactgtatgca
gagtggaaacatgtcaatgaagactcacaggaaaagaaaatcttactaagtcctgagcga
gtacatgaaattttcaagcgcatctctgatgaggagtgttttgtattgggaatggagcca
cgttatgctcggcccgagtggatgattgtcactgttctccctgtgccccctctctctgtg
cggcctgctgttgtcatgcagggctctgcccgtaaccaggatgacctgacacacaagtta
gctgacattgtgaagatcaacaaccagctgcggcggaatgagcagaacggtgctgctgct
catgtgattgctgaggatgtgaagctgctgcagttccatgtggccaccatggtggataat
gagctacctgggctgcccagggccatgcagaagtcaggtaggcccctcaagtccttgaaa
cagcggttgaagggcaaagaaggtcgagttcgtggtaatctgatgggcaagcgggtagac
ttctcagcccgtacagtcatcacacctgatcctaacctttccatcgaccaagtgggtgtg
cctcgttctattgccgccaacatgacctttgcggaaattgtcacccctttcaacattgac
aggcttcaagaactggttcgaaggggaaacagccagtaccctggagccaagtatatcatc
cgagataatggtgaccgcattgatctgcgcttccaccccaagcctagtgaccttcacctg
caaactggctacaaggtagagcgtcatatgtgtgatggggacattgtcattttcaaccgg
cagccaacattgcacaagatgtccatgatgggtcatagggttcgcatcttgccttggtcc
actttccgcctaaatctcagtgtgacaacaccctataatgcagactttgatggggacgag
atgaacctgcatttaccccagtctctagagaccagagcagagatccaggaactggccatg
gtgccccgaatgatcgttacaccccagagcaaccggccagtcatgggcattgtccaggat
acacttactgccgtgcgaaagttcaccaagagagatgtcttcctagagaggggtgaagtg
atgaacctattaatgttcctttcaacatgggatgggaaggtaccccaaccagccatactg
aaaccccgacctttgtggacaggaaaacagatcttctcccttattgtgcctgggcacatc
aactgtatcagaacccacagcactcatcctgatgatgaagacagtggcccttataagcac
atctctccaggagacaccaaggtggtagtggagaatggggagctgatcatgggtattctg
tgcaagaagtctctaggtacatcagctggctcacttgtccatatctcataccttgagatg
ggccatgacactacccgtctcttttactccaacattcagacagtcatcaataactggctt
ctcatagaaggtcataccattggcattggggactccattgctgatgccaagacctaccag
gacattcagaacaccatcaagaaagccaagcaagatgtaattgaggtgatcgagaaggca
cataacaatgaactggaaccaaccccaggaaacacccttcgccagacatttgagaaccag
gtgaacagaatcctcaatgatgcaagagacaagactggctcctctgcccagaagtccctg
tctgagtacaacaatttcaagtccatggtggtatcaggggctaaaggttctaaaatcaat
atctctcaggttattgcagttgtgggacagcagaatgtagaaggcaagcggattcccttc
ggcttcaaacaccggaccctgccccacttcatcaaagatgattatggtcctgagagccga
ggttttgtggagaattcctatttggctggtctcacacccaccgagttcttcttccatgcc
atgggtgggcgtgaagggcttattgacactgctgtcaagacagctgaaactggctatatc
cagagacgtctcatcaaatcgatggagtctgtgatggtgaaatatgatgcaacagtgcgc
aactccatcaaccaggtggtacaactacgttatggggaagatggactggctggtgaaagc
gtagagttccaaaacctggcaactctcaagccttccaataaggcctttgaaaaaaagttt
cgttttgactacaccaatgagcgagcattgcgacgcactctgcaggaagaattagtgaag
gatgtgctgagtaatgcccacatccaaaatgagctggaacgtgaatttgaacgaatgcgt
gaggacagagaagtgcttagagtcatcttccctactggagatagcaaggtggttctcccc
tgtaacttactgcgtatgatttggaatgcccagaaaatctttcacatcaacccccgactt
ccctctgacctgcaccctatcaaggttgtagatggtgtgaaagagttgagtaagaaattg
gtgattgtcaatggagaagaccctctgagccgtcaggcacaggaaaatgccactctgctc
ttcaatattcacctacgatccactctatgctcaagacgcatggcagaggagttcagactg
agtggagaagcctttgattggttactaggggagatagagtccaaattcaaccaggctatt
gcccatcctggggagatggtgggagctctagcagcccagtccttgggggagcctgccact
cagatgaccttgaacactttccactatgctggtgtgtcagccaagaatgtgacactgggt
gtgcctcgactcaaggaacttatcaacatttctaaaaagcccaagacaccctctcttact
gtgttcttgttgggtcaatcagcccgtgatgctgagagagccaaggacatcctgtgccgt
ctggaacacacaactctgaggaaagtgacagctaacactgctatctactatgaccctaat
ccccagagcacagtagtagcagaggatcaggaatgggtcaatgtctactatgagatgcct
gattttgatgttgccagaatttcaccctggctgctgcgagttgagctagaccgtaagcac
atgacagatcgaaagctgactatggaacagattgctgagaaaataaatgcaggttttggt
gatgacttaaactgcatcttcaatgatgacaatgcagagaagctggttctcaggattcga
atcatgaacagtgatgaaaacaagatgcaggaggaagaggaagtggtggataagatggat
gatgacgtctttctgcgttgcattgagtccaacatgctgactgatatgacattgcagggt
attgaacaaatcagcaaggtgtacatgcacttgccccaaacagacaataagaagaaaatc
atcatcacagaagatggagagttcaaggcattacaggaatggattctagaaacagatgga
gtgagtctgatgcgtgtattgagtgagaaggatgtggaccctgtacgaactacgtccaat
gatatcgtggagatattcacggttctgggcattgaggctgtgaggaaggcattagagcgg
gaactgtatcatgtgatctcctttgatggttcttatgtcaactaccgacatttggctcta
ctttgtgataccatgacctgccgtgggcacttgatggccattaccaggcacggtgtcaac
cggcaagacacaggacccctcatgaaatgttcctttgaagagacggtggatgtgctgatg
gaagctgcagctcatggagagagtgaccctatgaagggtgtgtccgaaaacatcatgttg
ggccaactggcccctgctggcacaggctgctttgaccttttattggatgctgagaaatgc
aagtatggcatggagatccccacaaacattcctggcctgggagcagctggacctactggc
atgttctttggctcagcccccagtcccatgggaggcatgtctccagctatgacaccctgg
aatcaaggggctacccctgcctatggagcctggtcccctagtgttgggagtgggatgact
cctggagctgctggcttttctcccagtgctgcatcagatgccagtggctttagtcctggc
tactccccagcctggtcccctacacctggctccccaggatctccaggcccttcgagccct
tatattccttcaccaggtggtgccatgtctcccagctattcaccaacatctccagcctat
gagcctcgatcaccagggggttatacccctcagagtccttcctactcccccacctctccc
tcctactcccccacatctcccagttacccccctacatctcccagttattcacccacctct
cccagctactcaccaacatctcctagctactcacccacatctcccagttactcaccaaca
tctcccagttattcaccaacatctcccagttattcgcccacctctcccagctactcacct
acctcccctaactactcacctaccagccccaactataccccaacatcacccagctatagt
ccaacatcacccagctactcacccaccagccccaactatacccctacgagccccaactac
agccctacctcccccagctactctccaacctctcccagctactctccaacctcccccagt
tattctccttcaagtccacgatatacaccacagtctccaacctataccccaagctcccct
agttatagccccagctctcccagctacagcccaacttcacctaagtatactccaactagt
ccttcctacagccccagctcaccagagtatacaccaacctcccccaagtactcacccacc
agccccaagtattcacccaccagccccaaatactctcctaccagccctacttactcacct
accaccccaaaatattcccctacatctcctacctactcaccaacctcaccggtctatact
ccaacttcccccaaatactcccccacttcccccacctattcgcccacctcccctaagtat
tcaccaaccagcccaacttattcacccacctctcccaaggggtctacctactctcccacc
tcacctggctactccccaaccagtcctacctacagcctcaccagcccagccatcagccca
gatgacagtgatgaggaaaactga
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integrated database retrieval system
