Gracilinanus agilis (agile gracile opossum): 123246972
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Entry
123246972 CDS
T07702
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
gas
Gracilinanus agilis (agile gracile opossum)
Pathway
gas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123246972 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gas03019
]
123246972 (PNLDC1)
Enzymes [BR:
gas01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
123246972 (PNLDC1)
Messenger RNA biogenesis [BR:
gas03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
123246972 (PNLDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
123246972
NCBI-ProteinID:
XP_044531692
LinkDB
All DBs
Position
4:424017529..424039171
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AA seq
533 aa
AA seq
DB search
MELGADCFEQKLPMLEELILASDFLGLDIEFTGLRSIYPKGQQTSLFDSPAEWYLKTRRS
IQQFTVCQIGLSMFSNMGRKSNKYLAHSYNFFLFPTTLGIMDSEFSFQASSILFLNQYGF
DYNKFLKNGIPYMNEEQEKKIKQDLLTGNWKVRSTLDKDQMKVVIDEVTRWLEMAQEGDW
MTLPDITGFQAFEVQLVLRQALPTVWTLMKDKGVLVKKVSRQYRWCLENSSRDHDDCRRE
KILLSARGFAVFFQMLVKAKKPLVGHNMMMDLLHLHEKFYRPLPESYEQFKLNIHGLFPV
LIDTKNVTKEIWKELSFPRASNLLEVYEVLNSDLNPTKNSCPVIIHASECIKYVETKYPH
EAAYDAFLCGSVLLKVAHLLLHRSTGGVRLEPTFPQYLGVLAPYVNQVNLIRACISKINF
SGPDSPSSRPPTLILKVKRWPGVDEEQIYYEFKDLCKFDVRRFTRNQFLLMTNKFKDVRI
VLQEYRYHPDLQVMLYRYWRHSPNINCILQICGVVTAWAFLAFILGGSPSHVQ
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atggagctgggcgccgactgctttgagcagaagttgcctatgctggaggagctcattctg
gcctcggactttctgggtttggacatagaatttacaggcttgaggtccatctacccaaaa
ggccagcaaaccagtctctttgactcaccagcagagtggtatctgaagaccagaaggagc
attcagcagtttacagtgtgtcagattggattgtcaatgttttcaaatatgggaagaaag
tcaaacaagtatttagcccattcatataacttcttcctcttccctaccactcttggaatt
atggattcagagttctccttccaggcctctagtattctttttttgaatcagtatggtttc
gattataataagtttctcaaaaatgggattccatatatgaatgaagaacaagaaaagaaa
attaagcaagatcttctaacagggaattggaaagttcgtagtacattggacaaagaccaa
atgaaggtggtgattgatgaggtaactcggtggttggagatggcacaagaaggagattgg
atgacacttcctgatataactgggttccaggcttttgaggtacagttggtactgaggcag
gctctccccacagtttggaccttgatgaaagacaaaggggtgttagtgaagaaagtgagc
aggcaataccgctggtgtctagagaattcctctcgtgaccatgatgactgcaggagagag
aagattctcctgtctgctcggggtttcgctgtctttttccagatgctggtaaaagccaag
aagcctttggtgggacataacatgatgatggatcttttgcaccttcatgagaagttctac
agacctctcccagaatcctatgaacaatttaagctgaacatccatggcttgtttccagtc
ctcatagataccaagaatgtgacaaaagagatttggaaggaactaagtttcccgagagct
tcaaatcttttggaggtttatgaagtcctaaacagtgacctgaatcctaccaagaattct
tgtccagtaatcatccatgcaagcgagtgtatcaaatatgttgagaccaaataccctcat
gaagcagcttatgatgccttcctttgtggatcagtactcttgaaggtggcccacttactg
ctacatagatcaactgggggcgtgagactggagcccacgttccctcagtatcttggggtg
ctggccccttatgtgaaccaggtgaaccttatccgagcttgtatctctaaaatcaatttc
tctggcccagattcccccagcagccggccacccaccctaattctcaaagtcaagaggtgg
cctggggtagatgaagaacagatttattatgaattcaaggatctctgcaaatttgatgtc
cggcgattcacccggaaccagtttctgcttatgaccaacaagtttaaggatgtcaggatt
gtgttgcaagaatacaggtatcaccctgacctgcaagtgatgctgtaccgatattggaga
cattcacctaatatcaactgcatactacaaatctgtggcgttgttactgcttgggccttt
ctggcttttattcttggaggatctccatcgcatgtacagtga
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