Gracilinanus agilis (agile gracile opossum): 123247424
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Entry
123247424 CDS
T07702
Symbol
RC3H1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
gas
Gracilinanus agilis (agile gracile opossum)
Brite
KEGG Orthology (KO) [BR:
gas00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gas03000
]
123247424 (RC3H1)
04121 Ubiquitin system [BR:
gas04121
]
123247424 (RC3H1)
Transcription factors [BR:
gas03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
123247424 (RC3H1)
Ubiquitin system [BR:
gas04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
123247424 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-C3HC4_2
zf_CCCH_4
FYVE
zf-CCCH_4
PaaA_PaaC
Baculo_IE-1
Vesi_VP2
zf-RING_4
zf-RING_6
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
123247424
NCBI-ProteinID:
XP_044532245
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Position
4:complement(67897268..67949048)
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AA seq
1134 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGTDQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQDELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSAAILSEE
GAVDLPSRKPTALPNGIVSAGNTVTQLIPRGTDSSYDSGLKPGKIDHLSSSAPGSPPDLL
EPGPKNISALPVTPHPVPPRGPTDLPSMPVTKPLPMVPRGSQLYSAQQADVFYQDPRGAA
PPFEPAPYPPGMYYTPTPQCVSRFVRPPPSAPEPGPPYLDHYPPYLQDRVVNSQYGTQPQ
QYPAIYPPHYDGRRVYPTQSYPREEIFQESPVPIEIPPAAVSPYVPESRERYQQIEGYYP
VGPHPSQIRPSYIREPYSRLPPPPQAHPSLDELHRRRKEIMAQLEERKVISPPPFAPSPT
LPHSFHPEEYLDDDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDVKPKDAVAAGSVEMT
NVDSKSVRDQRLELQRRAAETSDDDLIPFGDRPTVSRFGAISRTSKTMYQGSGPMQALAA
QGASTKSISISDYSPYGAHGGWGGSPYSPHQTMPSQGHFTERERLSMSEVASHGKPLPSA
EREQLRLELQQLNHQINQHTQLRGLEAVSNRLLLQRETNTLAGQPPPQPPPPPPKWPGMV
SSEQLSLELHQVEREIGKRTRELSMENQSSLDMKNKLGPSKQAENGQPEPQNKVPAEDLA
LTFSSEVPNGSTLSQENISLLSNKTSSLTLAEDPEGGGDNNDSQRTGVTPSSAP
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccgcaatggacggatttcctctcctgcccaatttgcactcagaca
ttcgacgaaacgatccgaaagcctatcagccttggctgtggccacactgtctgcaagatg
tgcctgaacaagcttcaccgcaaggcgtgcccctttgaccagaccactattaacaccgac
atagagctcctgcctgtgaactcggccttgctgcaattagtgggtgctcaggttcctgag
caacagcccattactttatgtagtggggtagaagatacaaaacattatgaggaagcaaag
aaatgtgtagaagaattagcattgtatctgaaaccactcagcagtgctagaggagtaggt
ctgaacagcaccactcagagtgttctgagtcgcccaatgcagaggaaattggtgacatta
gtccactgccagttagtggaagaagaaggtcggattcgtgccatgagggcagctcgatct
ttaggtgaaaggactgtcacagaactaatcctccagcaccagaatcctcaacagctttcc
tcaaatctttgggcagcagtcagggccaggggctgccagttccttggaccagcaatgcag
gaggaagctctaaagctggtcttactggccttagaagatggatctgctttgtctcggaaa
gtcttggttctatttgtggtgcaaagattggagccacgatttcctcaggcctcaaaaacc
agcattggacatgttgttcagctactgtacagagcctcctgtttcaaggtgacaaaacgt
gatgaggattcctccttaatgcaattgaaggaggaatttaggacatatgaagctcttcgt
cgggaacatgactctcagatcgtgcagattgccatggaggcaggcttgcgcattgcccca
gaccaatggtcttcccttctttatggagaccagtcacataaatctcatatgcagtccatt
attgacaagttgcagaccccagcctcatttgcacagagcgttcaggaactaacaattgct
cttcagaggactggtgaccctgcaaacctgaaccgcctgcgacctcatctggagctgtta
gcaaatattgaccctagtccagatgcccctcccccaacctgggaacagctagaaaatggg
ttggttgctgtgcgcacagtggtgcatggactggttgattatattcagaatcacagcaag
aaaggaacagatcagcagcagcctcctcagcacagcaagtataaaacttacatgtgccga
gacatgaaacagagaggagggtgcccccggggggccagctgcacatttgcacactcacag
gatgaattggaaaaatttcgtaaaatgaacaaacgtctggttcccagaagacccctgagt
gcctccttaggccagctcaatgaggtgggcctaccttcagcagctatcctttcagaagaa
ggggcagtggacctgcccagcagaaagcctactgccctgccgaatgggattgtgtcagca
gggaacacagtgacacagctgatcccccgagggacggactccagctacgactctggtctg
aagccagggaagattgatcacctgagcagcagtgctcctggatcccctcctgacctgctg
gaacctggacccaagaacatttctgccttacctgtgactcctcatcctgtaccccccagg
ggaccgacagacctgccttccatgcctgttaccaaacctcttcctatggtaccacgaggc
tcccagctatactcagcacaacaagcagatgtgttttatcaggatcctcgaggggctgct
ccaccttttgagccagcaccttatccaccagggatgtactatactccaaccccacaatgt
gtctcccgctttgtccgacctccaccatctgctcctgaacctggtcctccatacttggat
cattatccaccctacctccaggatcgtgtagtaaattcccagtatgggactcagccacaa
cagtatccagccatatatccaccacattatgatggccgtcgtgtctatcctacacagtct
tatcctcgagaagagattttccaggaaagcccagtacccattgagattccacctgcagct
gtttcaccttatgtaccagagtccagagagagataccagcaaatagagggttactatcca
gtgggtccacatccaagtcagataagaccatcatatatcagagagccttacagcagacta
ccacctccccctcaggcccaccctagtctagatgagctgcatcgacggcgaaaagagatc
atggcccagttagaagagagaaaagtcatctccccacctccttttgcaccttcaccaact
ttgccccattcattccatccagaggaatatttggatgatgacttgaaagttgctgggaaa
tacaaagggaatgattacagccagtattcaccttggtcatgtgacaccattggctcctac
attgggaccaaagatgtaaaacccaaagatgctgtggctgcaggcagtgtggagatgacg
aatgtggacagtaaaagtgtgagggaccagcggctagagcttcaacgaagggcagcagaa
accagtgatgatgacctcatcccatttggtgaccgccccacagtttcccggtttggtgcc
atatctcgaacttccaagactatgtatcagggttctggcccaatgcaggctctggcagct
cagggagcttccaccaaatcaataagcatttctgattacagtccatatggagctcatggt
ggctggggtggttctccatattcccctcatcagactatgccttctcagggacacttcact
gaaagggagagattgtccatgtcagaagtggccagtcatgggaaacccttaccctctgct
gagagagaacaactgagactagagctgcagcagttaaaccaccagattaaccagcacacc
cagcttcgaggacttgaggctgttagtaacaggctgctgttgcagagggagacgaacact
ctggcaggccagccccctcctcagcccccaccaccaccccccaagtggcctggaatggtt
tcaagtgagcagttgagcttggaactacaccaggtggagcgagaaattgggaagagaact
cgggaactgagcatggagaaccagtcttctctggacatgaaaaacaaattgggtcccagt
aagcaagcagaaaatggacaaccagaaccacaaaacaaggttccagctgaggaccttgca
ttgacattcagcagtgaagtgccgaatggatcgaccttatcacaagagaacatcagcctc
ctgtcaaacaagacctcctctttgaccctggctgaggatcctgaaggaggaggagataac
aatgactctcagaggacaggagtcacgcccagctctgctccctaa
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