Gracilinanus agilis (agile gracile opossum): 123248793
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Entry
123248793 CDS
T07702
Symbol
TOPBP1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
gas
Gracilinanus agilis (agile gracile opossum)
Pathway
gas03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
123248793 (TOPBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gas03032
]
123248793 (TOPBP1)
03400 DNA repair and recombination proteins [BR:
gas03400
]
123248793 (TOPBP1)
DNA replication proteins [BR:
gas03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
123248793 (TOPBP1)
DNA repair and recombination proteins [BR:
gas03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
123248793 (TOPBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
LIG3_BRCT
RTT107_BRCT_5
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
123248793
NCBI-ProteinID:
XP_044533591
LinkDB
All DBs
Position
5:complement(42775360..42830357)
Genome browser
AA seq
1512 aa
AA seq
DB search
MSENDREPYYVKFVKAQENSKFFFTALGSMKEFQSEEYLQTITEEEALNIKKNDRSLYIC
DPFSGIVFDHLKKLGCRIVGPQVVIFCMQQQRCVPKAEYPVYNMIMADVTISCTSLDKET
RKEVHKYVQMMGGRVCRDLSISVTHLIAGEVGSKKYLVAANLGKPIMLPSWVKELWKKSQ
EKCLTQFTDINMEDFRCPIFFGCTICVTGLCSLDRRAVQRLTVEHGGQYMGQLKMNECTH
LIVQEPKGQKYECAKRWNVHCVTIQWFFHSIEKGFCQDEAKYKTEPRSEAKSVPGTSTPT
DQNNEASGRTLSDVSHISNINSSCINESTHNSIMNNKLGSLLENLQNLDISAFQAPEDLL
DGCRIYLCGFSGRKLDKLRRLINCGGGVRFNQLNEDVTHVIVGDYDDELKQFWTKSTHRP
HVVGAKWLLECFSKGYLLSEEPYIHLNYQPVEITVSDQPVMKSTLSKRNDSFSKKEFVDT
EKHQQADEDLLSQYMNMLVDEGEKSGTGIFSDSSDIIVQAENQSSLSHNSLPETSTNIEG
LFSRKKFLVVGFSEEDESCIADAIKENAGKILPLQSRTISDYAVVPLLGCEVESTVGEVV
TNTWLITCIEQQKLFDPESNPLFTPIPVLETSSTPLENCVLSFSQFIGAEKDSLVYLASL
LGARVQEFFVRKDNTKNDMFASTHLIVKQPDGSKYQAAQKWGLPAVTMAWILETAKLGRR
ADECKFMVGNLPKQEESFETQLTVNKTYSDTSENSNMVLEPERRPPVTPLDVNRFQSKTF
HTVISQHSKKCSTPPIEAQPLQKEPSLHLDTPSKFLSKDKLFKPSFDVKDALAALETPLG
PNQRSRRMSTPLSEVIGRNLKHALANSTRHTVALTASPVLKDAQSEKEEDPKPLHNVVTC
VSKKLSKKQSELNTIAASLGAEYRWSFDETVTHFIYQGRPNDTNREYKSVKERGIYIVSE
HWLLESAQVQRRLPESHYPHTYNPKMSLDISAVQDSRVCLSQSPSTGKMAKDDDEPLLHL
SLEGNDEDITIDQKPVASTNGEIPNIPKGALTQTLEMRKSFQKQLQEIMSATSTVKLQGQ
RNSLSRNGCDSSSSTPDNTWSARSGRSRVLEALRQSRQAIADVNIEPSQSEQIIWDDPTA
REERARLASNFQWPICPTQYPDLQTSIKDLEDSPFQESLRDSAVAENAVCDPGDTCMTKT
PKEPVCEDLEITIKDSHLIPTPQAPSIAFPLANPPVAPHPKEKTVQAEETHEELEKQYRF
QLSSLNPQERIDYCHLIEELGGLVLEKQCFDPSCTHIVVGHPLRNEKYLASMAAGKWVLH
RSYLEACRIAGHFIQEEEYEWGSSSILDALTGITVQQKKLALAAMRWRKRIQKKQEEGIV
EGAFSGWKVILNVDQSREAGFRRLLQSGGAKVLPGHSVPLFKEATHLFADFNKLKPDDNR
VNIGEAVAHKVNCLKPEYIADYLMQESPPSLECYSLPEAVSFLQNNKETVTGLSQKRKTP
TEVNKFKRPRIY
NT seq
4539 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaatgacagagaaccgtattacgtgaagtttgtgaaggcccaggagaactcg
aagtttttttttactgctcttgggtctatgaaagaattccagtcagaagaatatcttcaa
actattacagaagaagaagcattaaatattaaaaaaaatgacaggtcactctatatctgt
gacccatttagtggtattgtttttgatcatctcaaaaagcttggctgtagaattgttggc
ccacaagtagtcatattttgtatgcagcagcaacgatgtgtcccaaaagcagagtatcca
gtttataatatgattatggcagatgtaactatttcttgcacaagccttgacaaagaaaca
aggaaagaagttcataaatatgtacaaatgatgggtggacgagtttgcagagatttgagt
atatcagtaactcaccttattgctggagaagttggcagcaaaaaatatttagtggctgca
aatttagggaaacctattatgcttccttcttgggtaaaagagttatggaagaaatcacaa
gaaaaatgtttgacacaatttacagatataaatatggaagatttcagatgccctatattt
tttggctgtactatctgtgtgaccggtttatgtagcttggatagaagggcagttcagcga
ctcactgttgagcatggaggtcaatatatgggacaattgaaaatgaatgaatgcacacac
ctgattgttcaagaaccaaaaggtcagaaatatgaatgtgccaagagatggaatgtacac
tgtgtgacaatccagtggttttttcacagtattgagaaaggcttttgtcaagatgaagcc
aagtataagacagaacctagatcagaagcaaagagtgtgccaggtacttcaactcctact
gatcagaacaatgaagctagtggtcgtactctttcagatgtcagtcacatatctaacatc
aattcaagttgcattaatgagtctacacataactcaattatgaacaacaaattgggatct
ctacttgaaaatctacaaaatctggatatcagcgcatttcaagcacctgaggacttacta
gatggctgtaggatatacctttgtgggtttagtggcagaaagttagataaactgagaaga
cttattaattgtggtggtggagttcgatttaatcagcttaatgaagatgtgactcatgtt
attgtgggagattacgatgatgagttaaagcagttttggactaaatcaacacacaggcct
catgtagtgggagcaaaatggctactggagtgttttagtaaaggttatttgctctctgag
gagccatatatccacttgaattaccaaccagtggagataactgtttcagatcaaccagta
atgaaatcgacactttccaaaaggaatgacagtttttccaagaaagaatttgtggacact
gagaaacatcagcaagctgatgaagacttactctctcaatatatgaacatgctagtagat
gaaggtgagaagtcaggaactgggatctttagtgattccagtgatattattgtacaagcg
gagaaccagtcttccctcagccacaattcactgcctgagacttctacaaatattgaaggt
ttgtttagccggaagaagttccttgttgtgggttttagtgaagaagatgaatcttgcatt
gccgacgctattaaagaaaatgctggaaaaattctgcccctccaaagcagaactatttct
gactatgctgtggttcctttactggggtgtgaagtggagtcaactgtaggagaagttgtt
acaaatacatggctgattacttgtattgagcaacaaaagctttttgacccagagtcaaat
ccactcttcacaccaataccagtattggaaacaagtagtactcctttagaaaactgtgtt
ctttcattcagccaatttattggagcggagaaagattccttggtatacttagcaagcctg
cttggagcaagagttcaagaattctttgtgcgcaaggacaatacaaagaatgacatgttt
gccagtacccatcttatagtgaagcaaccagatggttctaaatatcaggctgcacagaag
tggggattacctgcagtgactatggcttggatattagagactgccaaattgggaaggaga
gcagatgaatgcaagtttatggttggaaatctacccaaacaagaagaaagttttgaaacc
cagttgacagtcaataagacttattcagatacttcagagaattctaatatggtcctggaa
cctgaaagaagacctcctgttacacctttagatgtaaacagattccagagtaaaactttt
catactgtaatctcacagcattccaaaaagtgctcaacccctcctattgaagcacagcca
cttcaaaaagagccttcactacaccttgacacaccatcgaaatttctgtccaaagacaaa
ctctttaaaccttcttttgatgtaaaggatgcactggcagccttggaaactccattaggt
cccaatcaacgaagccgaagaatgagtaccccactttctgaagtcattgggaggaacttg
aaacatgctctggcaaatagcactcgccacacagttgctcttactgccagtcctgtgctg
aaagatgcccagtcagaaaaggaggaagatcccaaaccacttcacaatgtagttacatgt
gttagtaaaaaactcagtaagaaacagagtgaactaaatactattgcagcatcccttgga
gcagagtacagatggagttttgatgaaacagtgactcatttcatctatcaagggcgacca
aatgacactaatcgagagtataagtctgttaaagaaagagggatatacattgtttcagag
cactggcttttagaaagtgctcaagtacagaggcgacttcctgaatctcattatccacat
acttacaaccccaaaatgagcctggatataagtgcagtgcaagacagcagagtttgtctc
agtcagtctccatcaactggtaaaatggcaaaagatgacgatgagcctcttcttcattta
tctttggaaggaaatgatgaagatataaccattgatcagaagcctgtagcaagtacaaat
ggagaaataccgaatattcccaaaggagctctgacacagactttggagatgagaaagagc
ttccagaagcagctgcaggagataatgtcagcaacatcaacagtcaaactccaagggcag
aggaattccctttccagaaatggttgtgacagctcttcttcaactcctgacaatacctgg
tctgcacgcagtggccgcagcagagttctagaagcattaaggcaatctcgtcaagccatt
gctgatgtcaacatagagccttcccaaagtgaacagatcatttgggatgaccccacagcc
cgggaagagagagcaaggctggccagcaactttcagtggcccatctgtcccacccagtat
cctgaccttcaaaccagcataaaggatttggaagattcccccttccaggaatctttgcgt
gattctgcagttgctgaaaatgctgtctgtgatcctggagacacatgtatgaccaagacc
ccaaaagaaccagtttgtgaagatctagaaatcaccataaaagatagccatctcattcct
acgccacaagcccccagcattgctttcccccttgccaacccacctgtggctccacacccc
aaagaaaaaacagtccaggcagaggagacacatgaagaattagaaaaacaataccgattt
cagctctcctcacttaatcctcaagaacgaattgattattgtcacctaattgaggaatta
ggtggccttgtgctagagaaacagtgctttgatccaagctgtacacacattgttgtggga
catcctcttcggaatgagaaatatttggcttcaatggcagctggaaagtgggtgcttcat
cgctcctatcttgaagcttgcagaatagctgggcatttcatccaggaagaagaatatgaa
tggggaagtagttccatactcgatgctttgactggaatcactgtacaacagaagaaacta
gcacttgctgcaatgaggtggaggaaaaggattcagaaaaaacaagaggaaggcattgtt
gagggggcttttagtgggtggaaagtgattttaaatgtcgatcagtccagagaagcagga
tttcggcgtcttcttcagtctggaggagcaaaggttttacctggtcattctgtgcctcta
tttaaagaagccacacatctttttgctgacttcaataagctgaaaccagatgacaataga
gttaacataggggaagctgttgcccataaagtgaactgcttgaagccagaatacattgct
gattaccttatgcaggaatctcctccttctttggaatgttattctctaccggaagcagtc
tcattcctccaaaataataaggaaactgtgacaggattatcacagaagagaaaaactcct
acagaagtaaacaaattcaagcgaccgagaatatattaa
DBGET
integrated database retrieval system
