Gracilinanus agilis (agile gracile opossum): 123249317
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Entry
123249317 CDS
T07702
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
gas
Gracilinanus agilis (agile gracile opossum)
Brite
KEGG Orthology (KO) [BR:
gas00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gas03016
]
123249317 (RTCB)
Enzymes [BR:
gas01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
123249317 (RTCB)
Transfer RNA biogenesis [BR:
gas03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
123249317 (RTCB)
Prokaryotic type
tRNA splicing ligases
123249317 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
123249317
NCBI-ProteinID:
XP_044534245
LinkDB
All DBs
Position
5:222558720..222576985
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLDKIHKNCWRIKKGFVPNMQVEGVFYVNDPLEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMSDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDDIYNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARISS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaatgacgagctgcagttcctggacaagatccacaagaactgctgg
aggatcaagaagggcttcgtgcccaacatgcaggtagaaggagtgttctacgtgaatgat
ccacttgagaaattaatgtttgaggagttaagaaatgcctgccgaggtgggggtgtcggt
ggcttcttgccagcaatgaaacagattggcaatgtggcagccttacctgggatcgttcat
agatctattggacttcctgatgtccattctggttatggatttgcaattgggaacatggct
gcctttgatatgagtgacccagaagctgtagtgtccccaggtggtgtcggatttgatatc
aactgtggtgtccgattgctgagaaccaaccttgatgaaagtgatgtccagcctgtgaag
gaacaactagcccaggccatgtttgaccacattcctgttggggtgggatcaaaaggcgtt
atcccaatgaatgccaaggacttggaggaggctctggagatgggagtggactggtctcta
cgagaagggtatgcctgggctgaggataaggagcattgtgaggaatatgggcgtatgctg
caagctgaccccaataaggtctcggccagggctaaaaagagaggccttcctcagcttggg
accctgggagcaggaaatcattatgctgaaatccaagttgtggatgatatttataatgag
tacgctgccaagaagatgggcattgaccacaaggggcaggtgtgtgtgatgatccacagt
ggcagcaggggcctgggccatcaagtagctacagatgcgctagtggctatggaaaaagct
atgaagagagacaagattattgtcaatgaccgtcagttagcatgtgcaaggatcagctcc
ccggaggggcaggattacctgaaggggatggcagctgccggaaactatgcctgggtcaac
cggtcctccatgacattcttgacccgacaggcttttgccaaggtcttcaacacaacacct
gatgacctggacctccacgtgatctatgatgtctcccacaacatcgccaaggtggaacag
catgtggtggatgggaaagagcggaccctgctagtgcacaggaagggctccacccgggcc
ttccccccacaccatcccctcattgctgtggattaccagctcactggacagccagttctc
attgggggaaccatgggaacctgtagctatgtccttactgggactgagcagggcatgact
gaaacctttggaacaacctgccatggagcaggtcgtgcattgtcccgagcaaaatctcga
cgtaacttagacttccaggatgttctggataaattggctgacatgggcatcgccatcagg
gttgcttcccctaaactggtgatggaggaggctcccgaatcctataaaaacgtgacagat
gtggtgaatacttgccatgatgctggaatcagcaagaaggccatcaaactcagaccaatt
gcagttatcaaaggctaa
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