Gracilinanus agilis (agile gracile opossum): 123249472
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Entry
123249472 CDS
T07702
Symbol
SMARCC2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
gas
Gracilinanus agilis (agile gracile opossum)
Pathway
gas03082
ATP-dependent chromatin remodeling
gas04714
Thermogenesis
gas05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
gas00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
123249472 (SMARCC2)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
123249472 (SMARCC2)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
123249472 (SMARCC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gas03021
]
123249472 (SMARCC2)
03036 Chromosome and associated proteins [BR:
gas03036
]
123249472 (SMARCC2)
Transcription machinery [BR:
gas03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
123249472 (SMARCC2)
Chromosome and associated proteins [BR:
gas03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
123249472 (SMARCC2)
PBAF complex
123249472 (SMARCC2)
GBAF(ncBAF) complex
123249472 (SMARCC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
Motif
Other DBs
NCBI-GeneID:
123249472
NCBI-ProteinID:
XP_044534426
LinkDB
All DBs
Position
5:283313278..283329774
Genome browser
AA seq
1240 aa
AA seq
DB search
MTVVFGLPFLRSNFAQDFHLSPSSSSTSKVPCSYIQAEPPTNKSLSSLVVQLLQFQEEVF
GKHVSNAPLTKLPIKCFLDFKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRNVEMF
MTIEKSLVQNNCLARPNIFLHPEIDLKLLGKLKDIIKRHQGTVTEDKNNASHIVCPVPGN
LEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPASEIEASVEDAPTPEKPRKVHAKWILD
TDTFNEWMNEEDYEVNDDKNPVSRRKKISAKTLTDEVNSPDSDRRDKKGSNYKKRKRSPS
PSPTPEAKKKNAKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKTVNTK
KDSESAPVKGGTMTDLDEQEDESMETAGKDEDESSTGNKGEQAKNPDLHEDNVTEQTHHI
IIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTST
ACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSGLVPL
QPKTPQGRQVDADNKAGRKGKELDDLVPETAKGKPELQTSASQQMLNFPDKGKEKPTDMQ
NFGLRTDMYTKKNVPSKSKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQD
ECILHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAA
KSALEEFSKMKEEVPTALVEAHVRKVEEAAKMTGKADPSFGLESSGIAGTTSDEPDRIEE
SGTDEPRAENQAAEEKKEPKEPREGGTATEEEVKDKPSEAPKKEEEKGKEGDMEKESEKS
DGDPMVDQEKEKEPKEGQEEVLKDVVEAEGERKTKVERDIGEGNLSTAAAAALAAAAVKA
KHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLADRQA
FHMEQLKYAEMRARQQHFQQMHQQQQQPPQNLPPGSQPVPSTGASVPPPAHSLAVAPPSV
APTPAGTGAPPGGLAPTEQMGQTGSASGSQQLQPAGAPQPGTVPPGAPPTGPHGPSPFPS
QQTPPSMIPGAVPGSGHPSVAGNAPLGLPFSMPPPPLPPPPSSIIPFSSLADSININLPP
PNLHGHHHHLPFAPGTLPPPNLPVSMASPLHPNLPATTTMSSSLPLGPGLGSAAAQSPAI
VAAVQGNFMPSASLLPDPGTPIPPDPTAPSPGTVTPVPPQ
NT seq
3723 nt
NT seq
+upstream
nt +downstream
nt
atgacagttgtgtttggcctgcctttcttaagaagcaattttgctcaagattttcatctc
tctccctcctcctcctccaccagcaaagttccctgttcatatatccaagctgaaccaccc
accaacaagtccctgtctagcctcgtggtacaattgctacaattccaagaggaggtcttt
ggcaagcatgtgagcaacgcaccactcaccaaacttccgatcaaatgtttcctagatttc
aaagcgggaggctccctttgtcacatccttgcagctgcttacaagttcaagagtgaccag
ggatggcggcgttacgatttccagaatccatcccgcatggaccgaaatgtggaaatgttc
atgaccattgagaagtccctggtgcagaataactgtttggcaagacccaatattttccta
cacccagagattgacctcaagctgctagggaaactgaaggatattatcaaaaggcatcag
ggaacagtcactgaagataagaacaatgcctctcacatagtatgccctgttcctgggaac
ctggaggaagaggaatgggtacgaccagtcatgaagagggacaaacaagttcttttgcac
tggggctactatcctgacagttatgacacctggattccagccagtgaaatagaagcttct
gtggaagatgcccctacacctgagaaaccaaggaaggttcatgcaaaatggattctggac
acggatactttcaacgaatggatgaatgaagaagactatgaagtgaacgatgacaaaaac
cctgtgtcccgacgtaagaagatctcggctaagacgctgacagatgaggtgaacagccca
gattcagacaggcgagacaagaagggcagtaactacaagaaaagaaagcgttctccttcc
ccctctccgacccctgaagccaaaaagaaaaatgcaaagaaggggccctcaacaccttac
actaaatcaaagcgtggccaccgagaagaagaacaagaggatttgaccaaggacatggat
gaaccctcaccagtccccaatgtggaagaagtgacactgcccaagacggtcaataccaag
aaggactcagaatcggcaccagttaaaggaggcaccatgactgaccttgatgagcaggag
gatgagagcatggagactgcaggcaaggatgaggatgagagcagcactggcaacaagggc
gaacaggccaagaacccggacctgcatgaagacaacgtgaccgaacagacccaccacatc
atcatccctagctacgcggcctggtttgactataatagcgtccatgctattgagaggagg
gctctgccagaattcttcaatggcaagaacaaatccaagactccagagatctacctggcc
tatcgaaacttcatgatcgatacctaccgcctgaacccacaagagtacctcacctccact
gcctgccgccggaacctggcaggtgatgtctgtgccatcatgagggtccatgccttcctg
gaacagtggggtctgatcaactaccaggtggatgcagagagtcgtccaactcctatggga
cccccgcctacttctcacttccatgtcctagctgacacaccctcagggctagtacccctg
cagcccaagacaccccagggccgccaagtggatgctgacaacaaggctgggcgaaaaggc
aaagagctagatgatctggtgccggagacagctaaggggaagccagagctgcagacctca
gcttcccagcaaatgctcaactttcctgacaaaggcaaagagaaaccaacagacatgcag
aattttggactacgaacagatatgtacaccaaaaagaatgtaccctccaagagcaaagcc
gcagccagtgcaacccgagagtggacagaacaggagacactactacttctggaggcactg
gaaatgtacaaagatgactggaacaaggtgtcggagcacgtagggagtcgtacacaggat
gaatgcatcctgcacttcctccgtttgcccattgaggacccatatcttgaagactccgag
gcctcgctgggccccctggcctaccagcctatccctttcagccagtctggcaaccccgtc
atgagcaccgttgccttcctggcctctgtggttgacccccgagtggcttctgctgctgcc
aagtcggccttagaggagttctccaagatgaaagaggaggttcccacagccctggtggag
gcccatgttcgaaaggtggaggaagcagccaagatgacgggcaaggcagacccgtccttt
ggtttggagagtagtggtatcgcaggaaccacctctgatgaacctgatcggattgaagaa
agtggaactgatgagcctcgggcagaaaaccaggctgcagaggaaaagaaagaacctaag
gaacctcgggaaggaggaactgccacagaggaagaagtgaaggataaaccgagtgaagca
cccaaaaaggaggaagagaaggggaaggaaggggatatggagaaagaatcagagaagagt
gatggggaccccatggttgaccaggaaaaagagaaagagccaaaggaagggcaggaggag
gtcctaaaggatgtggtagaggctgagggagaaaggaaaaccaaagtggagcgggacatt
ggtgaaggcaacctctccactgcagctgctgctgctttggcagcagctgctgtaaaagcc
aagcacttggctgccgttgaagagaggaagatcaagtccctggtggccctgctagtagag
actcagatgaagaagctggagatcaagcttcggcactttgaagagctggagactatcatg
gaccgggagcgagaggccctggaataccagaggcaacagcttctggctgacagacaagcc
ttccacatggaacagctgaagtacgcagagatgagggcacggcagcagcacttccagcaa
atgcaccaacagcaacagcaacctccccaaaacttaccccccggctcccagccagttcca
tccacaggagcctctgtgccaccccctgcccacagcttggctgtggctccaccctctgtg
gcccctactcctgctggcactggagcccctcctggtggcttggcccccactgaacagatg
ggacagacagggtcagcctcagggtcacaacagctacagccagccggagctccccaacct
gggactgtgccacctggagcaccccccactggaccccatggcccctcaccgttccccagc
caacaaactcctccctcaatgataccaggggcagtgccaggcagtgggcacccaagtgtg
gccggtaatgctcctttgggtttgcctttcagcatgccacctcctcctcttcctcctcct
ccatcatccatcatcccatttagtagcctagctgattccatcaatattaacctccctcct
cctaacctgcatgggcatcaccaccatcttccgtttgccccgggaaccctccccccacct
aacctgcctgtgtccatggcgagccctctacatcctaacctgccggcgactaccaccatg
tcatcctccttgcctctcgggccagggctgggatccgctgcggcccagagccctgctatt
gtggcagctgttcagggcaacttcatgcccagtgccagcctgctgccagacccaggcacc
ccgatacccccagaccctacagctcctagccctggcacggtgaccccagtgccaccgcag
tga
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