Gracilinanus agilis (agile gracile opossum): 123250253
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Entry
123250253 CDS
T07702
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain
KO
K19719
collagen type II alpha
Organism
gas
Gracilinanus agilis (agile gracile opossum)
Pathway
gas04151
PI3K-Akt signaling pathway
gas04510
Focal adhesion
gas04512
ECM-receptor interaction
gas04974
Protein digestion and absorption
gas05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
gas00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
123250253 (COL2A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
123250253 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
123250253 (COL2A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
123250253 (COL2A1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
123250253 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gas00536
]
123250253 (COL2A1)
Glycosaminoglycan binding proteins [BR:
gas00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
123250253 (COL2A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
123250253
NCBI-ProteinID:
XP_044535204
LinkDB
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Position
5:295005497..295093957
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AA seq
1494 aa
AA seq
DB search
MLELGRPKTLLLMSTLADGSQETERISTATLTGELENANSCVHEGQRYNDKDVWKPEPCR
ICVCDTGTVLCDEVICEDMKDCLHPEISFGECCPTCPTDPPTASGHLGPKGQKGEPGDIK
DVVGPKGPPGPQGPAGEQGPRGDRGEKGEKGSPGPRGRDGEPGTPGNPGPAGPPGPPGLP
GLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEPGEP
GVSGPMGPRGPPGPPGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYP
GLDGAKGEAGAPGAKGEGGSPGENGSPGPMGPRGLPGERGRNGPPGAAGARGNDGQPGPA
GPPGPVGPSGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGASGNPGAD
GIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEHGPKGET
GPAGPQGPPGPAGEEGKRGARGEPGAAGPVGPPGERGAPGNRGFPGQDGLAGPKGAPGER
GPSGLGGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQ
GARGQPGVMGFPGPKGANGEAGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPVGER
GEQGAPGPSGFQGLPGPPGSPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQ
GLQGARGLPGTPGTDGPKGATGPAGPNGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEK
GPEGAPGKDGGRGLTGPIGPPGPAGPNGEKGESGPPGPAGTAGARGAPGERGETGPPGPA
GFAGPPGADGQPGAKGEQGESGQKGDAGSPGPQGPSGAPGPQGPTGVTGPKGARGAQGPP
GATGFPGAAGRVGPPGSNGNPGPPGPPGASGKDGPKGARGDSGPPGRAGDPGLQGPAGAP
GEKGEPGDDGPSGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGS
GDRGPPGPVGPPGLTGPSGEPGREGSPGADGPPGRDGAAGVKGDRGETGPVGGPGAPGPP
GSPGPVGPTGKQGDRGESGAQGPMGPAGPAGARGIPGPQGPRGDKGETGEAGERGLKGHR
GFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGSNGIPGPIGPPGPRGRS
GETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADQAAGNLRQHDA
EVDATLKSLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKV
FCNMETGETCVYPNPPSVPKKNWWSSKGKEKKHVWFGETINGGFHFSYGDDNLAPNTANI
QMTFLRLLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYSV
LKDGCTKHTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGADQEFGVDIGPVCFL
NT seq
4485 nt
NT seq
+upstream
nt +downstream
nt
atgctggagttaggaagacccaaaacccttctgcttatgagcaccttagctgatggcagt
caagaaacagagagaatctcaacagccacactcacaggggaacttgaaaatgcaaacagc
tgtgttcatgaagggcagaggtataatgataaggatgtttggaaacctgagccttgcaga
atctgtgtgtgtgacactggaactgtcctgtgcgatgaagtaatctgtgaagacatgaaa
gactgtctccaccctgagatctcctttggagagtgctgccctacctgcccaactgacccg
cccaccgccagtggacatctgggaccaaagggacagaaaggagagcctggagatatcaaa
gatgttgtaggacccaaaggaccccctggaccacagggacctgcgggtgaacaaggaccc
cgaggtgaccgtggtgaaaaaggggaaaagggttctcctggacctcgtggtagagatggt
gaacctggaacccctggtaatcctggacccgccggtcctccaggacctccaggactccct
gggcttggtggaaactttgccgctcagatggcaggagggtttgatgagaaggctggaggc
gctcagctgggagtgatgcaaggacccatgggcccgatgggaccaagaggacctcctggc
ccttctggcgcacctggtcctcaaggatttcaaggcaatcccggtgaacctggagaaccc
ggtgtctccggccccatgggtccccgaggtcctcctggtccccctggaaaacctggtgat
gatggtgaagctggaaaacctggaaaatctggtgaacgtggtcctccaggtcctcaggga
gctcgtggtttcccaggtactcctggtcttcctggcgtcaaaggtcaccgaggttaccca
ggcttagatggagccaagggagaagctggtgctcctggtgctaagggtgaaggtggatct
cctggtgaaaatggttctcctggtccaatgggtccccgaggtctgcctggtgagagagga
cggaatggccctcctggtgctgcgggtgctcgaggcaatgatggtcaacctggcccagct
ggtccccctggtcctgtcggaccttcgggtggtcctggattcccaggtgctccaggggcc
aagggagaagctggtcccactggtgcccgtggtcctgaaggtgctcaagggcctagaggt
gaatctggtacccctggttctcctgggcctgcaggagcctcaggaaaccctggagctgat
gggatccctggagccaaaggatctgcgggtgctcctggaattgctggtgccccaggcttc
cctgggcctcgtggtcctcctggtcctcaaggtgctactggtcctctgggtcctaaaggt
cagacgggagaacctggtattgctggtttcaaaggtgaacacggtcctaaaggagaaact
ggtcctgctggacctcagggacctcctggcccagctggtgaagaaggcaagagaggtgct
cgtggggagcctggtgctgctggacctgttggtcctcctggagagagaggtgctcctggc
aaccgtggtttcccaggtcaggatggtcttgcaggtcccaagggagcccctggtgaacgt
ggacccagtggtcttggtggtcccaaaggagccaatggtgaccccggtcgtcctggagaa
cctggcctccctggagccaggggtctaactggtcgccctggtgatgctggccctcaaggc
aaagttggtccttctggagcccctggtgaggacggtcgtcctgggcctccaggacctcag
ggagctcgtgggcaacccggtgtcatgggattccctggtcctaaaggtgccaatggagaa
gctggcaaagctggtgagaagggactacctggtgctcctggtcttaggggtcttcctggc
aaagatggtgaaacaggcgctgcaggaccccctggaccagcgggtcctgttggtgagagg
ggtgaacagggcgctcctggaccatctggcttccagggacttcctggccctcctggctct
ccaggtgaaggtggaaaaccaggtgatcagggtgttcctggtgaagctggtgctcctggc
cttgtgggacccagaggtgaacgtggtttcccaggcgaacgtggctctcctggtgctcaa
ggtctacagggtgccaggggtctccctggaactcctggcactgatggtcctaaaggtgca
actggtccagctggccctaatggtgctcaaggtcccccaggtctgcaaggaatgcctggt
gagagaggtgcagctggtattgctgggccaaaaggagacagaggtgatgttggtgaaaaa
ggcccagagggagctcctggcaaagatggtggcagaggtctgactggtccgattggtccc
cctggccctgctggccccaatggcgagaagggtgaatctggtccccctggtcctgctgga
actgctggtgcccgtggtgccccaggtgaacgtggagagactggaccccctggcccagct
ggatttgcaggccctcctggtgctgatggtcagcctggtgctaagggtgagcaaggagaa
tctggccagaagggagatgctggttcccctggtcctcagggtccatctggagcacctggg
cctcagggtccaactggagtgactggtcctaaaggagctcgtggtgcccagggtcctcct
ggagccactggattcccaggagctgctggccgtgttggacctccaggttccaatggtaat
cctggcccccctggtcctcctggagcttctggaaaagatggtcccaaaggagctcgagga
gatagtggtcccccaggtcgggctggtgatcctggtcttcaaggtcctgctggtgcccct
ggtgagaaaggagagcctggagatgatggtccctcgggtcctgatggtcctcctggtccc
cagggtctggctggtcaaagaggaattgttggattgcctggtcaacgtggtgaaagaggc
ttccctggtctacctggcccttcaggtgagcctggcaagcagggagctcctggaggttct
ggagatcgtggtcctcctggtcctgtggggcctcctggcttgactggtccttctggtgaa
cctgggcgtgagggaagtcctggtgctgatgggcctccaggcagagatggtgcagcagga
gtcaagggtgatcgtggtgaaacaggtcctgttggtggtcctggagcccctggaccccct
ggctctcctggacccgttggaccaacaggcaaacagggagacagaggagaatctggtgca
caagggcccatgggtcctgcaggaccagctggagcaaggggaatcccaggtcctcaaggt
ccccgtggtgacaaaggagaaactggagaagctggtgagagaggactgaagggacaccgt
ggtttcactggacttcaaggtctccctggtccccctggtccttctggagatcaaggtgct
tctggtcctgctggtccttctggtccccgaggtccacctggcccagtgggtccttctggc
aaagatggctccaatggaatccctggccccatcggtccccctggtcctcgaggtcgctct
ggcgaaactggccctgctggtcctcctggaaatcctggaccccctggccctccaggtccc
cctggccctggcattgacatgtctgcctttgctggcttgggccagagagagaagggccct
gaccccctgcagtacatgcgagccgaccaagcagctggcaacctgcgacaacacgatgcc
gaggtagatgccaccctcaagtccctcaacaaccagattgaaagcatccgaagccccgag
ggctctcgcaagaacccagctcgcacttgccgagacctgaaactctgtcaccctgaatgg
aagagtggagactactggatcgaccccaaccagggctgcaccttggatgctatgaaagtt
ttctgcaacatggagaccggtgagacgtgtgtctaccccaacccacccagcgtccccaag
aagaactggtggagcagcaagggcaaggaaaagaagcacgtctggtttggagaaaccatc
aatggtggcttccatttcagctatggagatgacaacctggcccccaacactgccaacatc
cagatgaccttcctacgcctgttgtccactgagggttcccagaacatcacctaccactgt
aagaacagcatcgcctacttggacgaggcagctggtaacctcaagaaggccttgttgatc
cagggatcgaacgacgttgagattcgggctgagggcaacagcagattcacgtacagtgtg
ctgaaagatggctgcacgaaacacactggtaagtggggcaagacagtcatcgagtaccga
tcacagaagacctcccgtcttcccatcattgacattgcacctatggacattgggggggct
gatcaggaatttggtgtggacatcggccctgtctgcttcttgtaa
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integrated database retrieval system
