Gracilinanus agilis (agile gracile opossum): 123250536
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Entry
123250536 CDS
T07702
Symbol
PRPF40B
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
gas
Gracilinanus agilis (agile gracile opossum)
Pathway
gas03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gas00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123250536 (PRPF40B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gas03041
]
123250536 (PRPF40B)
Spliceosome [BR:
gas03041
]
Complex A
U1 snRNP components
U1 related factors
123250536 (PRPF40B)
Complex B
123250536 (PRPF40B)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
RhoGAP-FF1
DUF4936
DUF6887
Motif
Other DBs
NCBI-GeneID:
123250536
NCBI-ProteinID:
XP_044535592
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All DBs
Position
5:complement(293035898..293046811)
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AA seq
856 aa
AA seq
DB search
MMPPPFMPPPGIPPPFPPMGLPPMNQRPPAIPPIPPGMMPPMLPPMGGPPPITQIPGMVP
PMMPGMLMPAVPVTAATAPGVDTASSVVAGADPTRVLWSEHVAPDGRIYYYNADDKQSVW
EKPSILKSKAELLLAQCPWKEYKADTGKPYYYNNQSKESRWTRPKDLEELEALVKQEAAG
KQQPQTQPEPPPATPGPAPVPAGLIEPEPGGHEDSELSEPAQPLDQGLLHQEESTSSAGR
RPEEEEPKLEPERSSFSWSNREKAKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALP
KLSEKKQAFNAYKAQREKEEKEEARLRAKEAKQTLQHFLEQHDRMSSTTRYRRAEQTFGE
LEVWAVVPERDRKEIYDDVLFFLAKKEKEQAKQLRRRNIQALKSILDGMSSVSFQTTWSQ
AQQHLMDNPSFAQDHQLQNMDKEDALICFEEHIRALEREEEEERERARLRERRQHRKNRE
AFQTFLDELHETGQLHSMSTWMELYPAVSTDARFANMLGQPGSTPLDLFKFYVEDLKARF
HDEKKIIKDILKDRGFSVEVNTAFEDFAHVISFDKRAAALDAGNIKLTFNSLLEKAEARE
REREKEEARRLRRREAAFRSMLRQAAPALEPGTGWEEVRERFVCDSAFEQITLESERIRL
FREFLQVRESECQHFHIKGRKHGKKGKKHHRKRSHSPSGSESEDDEQPPLLRPSKRRKWN
PSESGSEPSSSLDSAESGGGPFGSRGSPSSHPALGSDHGFRKSKKPKKKGKKKRHKSNSP
ESEIEREKEKGGKEVEEKERERDKEREARRPEPRNRSPGLGLKKEKTGWDTSESELSEGE
LERRRRTLLQQLDDQQ
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atgatgccaccacccttcatgccccctccagggatccctccacccttccccccaatgggg
ctgcctcccatgaaccagagaccacctgccatccctcccatcccccctggcatgatgccc
ccgatgctcccaccaatgggggggccaccaccaattacacagataccagggatggtacca
cccatgatgccagggatgctgatgcccgcggtgcctgtcactgcagcgacggccccaggt
gtggacaccgccagctctgttgtggctggagcagaccctacgagggttttgtggagtgaa
cacgtggctcctgatgggcgaatctactactacaatgctgatgataagcagtccgtgtgg
gagaagcccagcatactcaagtccaaagctgagttgctgttggcccagtgcccctggaaa
gagtacaaggcagacactggcaaaccctactactacaacaaccagagtaaggagtcccgg
tggacccgtcctaaggacctggaggaactggaggctttggtcaaacaggaggctgcaggg
aagcagcagccacaaacacagcctgagccacctcctgctactcctggaccagctccagtc
cctgcaggcctcatagaacctgagccaggtgggcatgaagactctgagctgtcagaacct
gcccagcctctggatcaggggctactacatcaggaggagagcactagcagtgctggtagg
cggccagaggaggaagagccaaagctggagccagagaggtcaagcttcagctggagcaat
cgagaaaaggcaaagcaggcattcaaggaattgctaagggacaaggctgtcccctccaat
gcttcatgggaacaagccatgaagatggtggtcactgacccccgctacagtgctctgcca
aaactaagtgagaaaaagcaggcattcaatgcctacaaagcacagcgggagaaagaagag
aaggaggaggcccgcttgagggccaaagaggccaagcagaccctccagcactttctggaa
cagcatgaccgcatgagctctaccacgagataccggcgagccgaacaaacgtttggggaa
ctagaagtttgggctgtagtacccgagcgggaccgtaaagaaatttatgatgatgtcctc
ttcttcctcgccaagaaggagaaggagcaggcgaaacaacttcgtcgccgcaatatccag
gcactaaagagcatcctggatggaatgagcagcgtcagtttccaaactacctggtcccaa
gctcaacagcacctcatggacaaccccagctttgcccaggaccaccagctgcagaacatg
gacaaggaggatgcgctgatctgctttgaggagcacatccgagcactggaacgagaggaa
gaggaagagcgagagcgggcccgactgcgggagcggcgccagcatcgcaagaaccgagaa
gccttccagaccttcctggacgagctgcacgagacagggcagctgcactccatgtctacc
tggatggagctgtacccagcggtcagcaccgatgcccgctttgccaacatgctgggccag
ccgggctccacccctctggatctcttcaagttttatgtagaagatctgaaggccagattc
catgatgagaagaagatcattaaggacatccttaaggaccggggtttcagtgtggaagtg
aacacagcctttgaggactttgcacatgtcatcagctttgacaagagggctgctgcactg
gatgcgggcaatatcaagctgaccttcaacagcctcctggagaaggcagaggcgcgagaa
cgggagagggagaaggaagaagcccggaggcttcgacgtagggaagccgcctttcggagc
atgctgaggcaagccgcccctgccctagagcctggcactggctgggaagaggtccgagag
cgcttcgtgtgcgactctgcctttgaacagatcacactggaatctgagcggatacgtctc
ttccgagagttcttacaggtgcgggagagcgagtgccagcactttcacatcaaaggcaga
aaacatggcaaaaagggcaagaaacatcatcgaaagcgatcccattctccctcgggctct
gaatctgaggatgatgagcagccacctcttcttcggccttccaaacgcagaaaatggaat
ccctccgagtcaggctcagagccctcatcttcactcgattcagctgagagtgggggtggc
ccctttgggagccggggctctccttccagccaccctgctcttggatcagatcatggcttc
cggaagtctaagaagccgaagaagaaaggcaagaagaagaggcacaagtcgaacagtcct
gagagtgaaatagaacgagagaaagagaaaggaggcaaggaagtggaagagaaagaacga
gaacgggacaaggagagggaggcccggaggccagagccccggaatcggtcccctggcctc
ggacttaagaaagagaagacaggctgggacacatcagagagtgagctgagtgaaggggaa
ctggaacggcgccgccggacacttctgcagcagctggacgatcagcaatga
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