Gracilinanus agilis (agile gracile opossum): 123253020
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Entry
123253020 CDS
T07702
Symbol
COPB1
Name
(RefSeq) coatomer subunit beta
KO
K17301
coatomer subunit beta
Organism
gas
Gracilinanus agilis (agile gracile opossum)
Brite
KEGG Orthology (KO) [BR:
gas00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gas04131
]
123253020 (COPB1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gas04147
]
123253020 (COPB1)
Membrane trafficking [BR:
gas04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
123253020 (COPB1)
Exosome [BR:
gas04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
123253020 (COPB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Adaptin_N
Coatomer_b_Cpla
Coatamer_beta_C
HEAT
HEAT_2
Cnd1
HEAT_EZ
Arm
MMS19_N
Motif
Other DBs
NCBI-GeneID:
123253020
NCBI-ProteinID:
XP_044538226
LinkDB
All DBs
Position
6:235695029..235723831
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AA seq
953 aa
AA seq
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MTAAENVCYTLINVPMDSEPPSEIILKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLM
TIIRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILVCDAYRKDLQHPNEFIRGST
LRFLCKLKEAELLEPLMPAIRACLEHRHSYVRRNAVLAIYTIYRNFEHLIPDAPELIHDF
LVNEKDASCKRNAFMMLIHADQDRALDYLSTCIDQVQTFGDILQLVIVELIYKVCHANPS
ERARFIRCIYNLLQSSSPAVKYEAAGTLVTLSSAPTAIKAAAQCYIDLIIKESDNNVKLI
VLDRLIELKEHPAHERVLQDLVMDILRVLSTPDLEVRKKTLQLALDLVSSRNVEELVIVL
KKEVIKTNNVSEHEDTDKYRQLLVRTLHSCSVRFPDMAANVIPVLMEFLSDNNEAAAADV
LEFVREAIQRFDNLRLLIVEKMLEVFHAIKSVKIYRGALWILGEYCSTKEDIQSVMTEVR
RSLGEIPIVESEIKKEAGELKPEEEINVGPVQKLVTEMGTYATQSALSSSRPTKKEEDRP
PLRAFLLDGDFFVAASLATTLTKIALRYVALVQEKKKQNSFIAEAMLLMATILHLGKSSL
PKKPITDDDVDRISLCLKVLSECSPLMNDIFNKECRQSLSHMLSAKLEEEKLSQKKESEK
RNVTVQPDDPISFMQLTAKNEINCKEDQFQLSLLAAMGNTQRKEAADPLASKLNKVTQLT
GFSDPVYAEAYVHVNQYDIVLDVLVVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPH
DFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPASCTDAEF
RQMWAEFEWENKVTVNTNIIDLNEYLHHILKSTNMKCLTPEKALSGYCGFMAANLYARSI
FGEDALANVSIEKPIHLGPEAPVTGHIRIRAKSQGMALSLGDKINLSQKKTNV
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atgacggctgcggaaaatgtatgctatacgttaattaacgtaccgatggattcagaacca
ccatctgaaattatcttaaaaaatgacctcgaaaagggagatgtgaagtcaaagaccgag
gctttgaagaaagtgatcattatgatcctgaatggtgaaaagcttcctggacttctgatg
accatcattcgttttgtgctgcctctccaggatcataccatcaaaaaattactcttggta
ttttgggaaattgttcccaaaacaaccccagatggtagacttttgcatgagatgatcctt
gtgtgtgatgcttatcgaaaggatcttcagcaccccaatgagttcattcggggatccact
cttcgttttctttgcaaactgaaagaagcagaattactggagcctctgatgccagctatc
cgggcctgcctggagcatcgacacagctatgtccggaggaatgctgttctggccatctac
accatctacaggaattttgaacatcttatacctgatgctcctgaactcatccatgatttc
ctggttaatgagaaagatgcaagttgtaaaagaaatgcatttatgatgttgatccatgct
gaccaggatcgagctttggattacctaagtacttgcattgatcaagttcaaacatttggg
gacattcttcagttggtcattgttgaactaatttataaggtgtgccatgcaaatccatca
gaaagagctcgttttattcgttgcatctataatttattgcagtcatctagccctgcagta
aaatatgaagctgcaggcaccttggttaccctctctagtgccccgacagcaatcaaggct
gctgctcagtgttacattgacttaattattaaagagagtgacaacaacgtaaaactcatt
gtcctggatcgcttgatagagctgaaagagcatcctgctcacgagcgagtgctccaggat
ctggttatggacattttgagagtactgagtactccagatttagaagtgcgcaagaaaact
ctacaattagcactggaccttgtgtcttccagaaatgtcgaagagcttgtgatcgtcctg
aagaaggaagtgattaaaaccaataatgtttcagagcacgaagatactgacaaatacagg
cagctccttgtccgcacattgcactcttgctctgttcggtttccagatatggctgcgaac
gtcattccagtgctaatggagtttctcagtgataataatgaagcagcagctgctgatgtc
ttagagtttgtccgggaagctatccagcgatttgataatctcagattgcttattgttgag
aaaatgcttgaagtctttcatgctattaaatctgtcaaaatttaccgaggagcattgtgg
atcctgggggagtattgtagcaccaaagaagacatacagagtgtgatgactgaagtccgc
aggtccctgggggagatcccaattgtggaatcagaaataaagaaagaagctggtgaatta
aagcccgaagaagaaatcaatgtggggccagttcagaaactggtaactgagatgggtacc
tatgctactcagagtgccctcagcagttccagaccaaccaaaaaggaggaagacaggcct
ccacttcgagcatttctccttgacggggacttcttcgttgcagcatctcttgccacaact
ctaaccaagattgccttgcgttatgtggccctagttcaggagaagaagaagcagaattct
ttcattgctgaagctatgctgctcatggccactattcttcatttgggcaaatcctccctt
cccaagaagccaattacagatgatgatgtggaccgtatctccctgtgcctcaaggtcttg
tctgagtgttcacctttaatgaatgacattttcaataaagagtgcagacagtccctttct
cacatgctgtctgctaaactggaagaagagaagctctctcagaagaaagagtctgaaaag
aggaatgtgactgtccagcctgatgaccccatttccttcatgcaactcactgccaaaaat
gaaatcaactgtaaggaagaccagtttcagctgagcctgctggcagctatggggaacaca
cagaggaaggaagcagctgaccctctagcatcaaaacttaacaaggtgacccagctgaca
ggtttctcagatcctgtctatgcagaagcttatgttcatgtcaaccaatatgatatcgtt
ctggatgtacttgttgtaaaccagaccagtgatactctgcagaactgcacattagaacta
gccacactaggggacctaaaacttgtggaaaaaccatctcctttgactcttgcacctcat
gattttgcaaatattaaggctaatgttaaagtagcttcaacagaaaatggaatcattttt
ggtaatatagtatatgatgtgtctggagcagcaagtgacagaaactgtgtggtcctcagt
gacattcacattgacatcatggactacatccaacctgcttcttgcactgatgctgagttc
cgccagatgtgggcagaatttgagtgggaaaacaaagtgacagttaacacaaatataatt
gatttaaatgaatatttacatcatatactaaagtcaaccaatatgaagtgtctcactcca
gagaaggccctttctggatactgtggctttatggctgccaacctctatgcccgctccata
tttggagaggatgcacttgcaaatgtcagtattgaaaagccaattcatcttggaccagaa
gccccagttactggccacatacgaattcgtgcaaagagtcagggaatggccctgagcctt
ggagataaaatcaatctgtctcaaaagaaaactaatgtataa
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