KEGG T07702: 123253621

Gracilinanus agilis (agile gracile opossum): 123253621

Entry

123253621         CDS       T07702

Symbol

SMARCC1

Name

(RefSeq) SWI/SNF complex subunit SMARCC1

K11649

SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C

Organism

gas Gracilinanus agilis (agile gracile opossum)

Pathway

gas03082

ATP-dependent chromatin remodeling

gas04714

Thermogenesis

gas05225

Hepatocellular carcinoma

Brite

KEGG Orthology (KO) [BR:gas00001]
09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    123253621 (SMARCC1)
09150 Organismal Systems
  09159 Environmental adaptation
   04714 Thermogenesis
    123253621 (SMARCC1)
09160 Human Diseases
  09162 Cancer: specific types
   05225 Hepatocellular carcinoma
    123253621 (SMARCC1)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gas03021]
    123253621 (SMARCC1)
   03036 Chromosome and associated proteins [BR:gas03036]
    123253621 (SMARCC1)
Transcription machinery [BR:gas03021]
Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     123253621 (SMARCC1)
Chromosome and associated proteins [BR:gas03036]
Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    123253621 (SMARCC1)
   PBAF complex
    123253621 (SMARCC1)
   GBAF(ncBAF) complex
    123253621 (SMARCC1)

SSDB

Motif

Pfam:

SWIRM-assoc_2 SWIRM-assoc_3 SWIRM-assoc_1 SWIRM Myb_DNA-binding Myb_DNA-bind_6 Chromo HEAT_GCN1 DUF919 SpeFL

Other DBs

NCBI-GeneID:

123253621

NCBI-ProteinID:

XP_044538751

LinkDB

Position

1:complement(97903438..98063211)

AA seq 1107 aa
MAAAAGGGGSGAPGAAAGGAGPGGAAATAVGLALCRRKDGGPAGKFWESPETVSQLDSVR
VWLGKHYKKYVQADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFTKLPAKCFMDFKAGG
TLCHILGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQNNCLSRPNIYLIPDI
ELKLANKLKDIVKRHQGTFTDEKSKASHHIYPNPTSPEDEEWLRPVMKKDKQVLVHWGFY
PDSYDTWVHASDIDAEIEDPPIPEKPWKVNAKWILDTDIFNEWMNEEDYEVDENKKPVSF
RQRISTKNEEPVRSPERRDRKAAASTRKRKHSPSPPPPTPVESRKKTGKKGQASLYGKRR
GQKEEDEQEDLTKDMEDPTPVPNIEEVVLPKNVNPKKDSENTPVKGGTVADLDEQDEETV
TTGGKEDEDPSKGDQSRSIDPGEDNVTEQTNHIIIPSYASWFDYNCIHVIERRALPEFFN
GKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLVN
YQVDPESRPMAMGPPPTPHFNVLADTPSGLVPLHLRTPQVPAAQQMLNFPEKNKEKPTDL
QNFGLRTDIYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDE
CILHFLRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAK
AALEEFSRVREEVPLELVEAHVKKVQEAARASGKVDPTYGLESSCIAGTGPDEPEKLDGT
EEEKMETETDGQQTEKAENKGENETDESDKAQDGENEKSIEKEQDSEVNEDTKSEEKDAE
ENKENDPCKERENDTGKKKVEHEISEGNVATAAAAALASAATKAKHLAAVEERKIKSLVA
LLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYAELRARQQ
MEQQQHGQNTQQSHQHSGGPGMNPIGAPGHPGMLPHQQPPPYPMMHHQMPPPHPPQPGQM
PGPGSMMPGQPMPGRMIPAVAANIHPSGGGPPQPVMPPMPGNIIGPRVPLAAPNGMYPPP
PQQQPPPPPPTDGVTPPPAAAPASSAP

NT seq 3324 nt +upstreamnt +downstreamnt
atggccgcggcggcgggcggcgggggcagcggcgccccaggggcggcggcgggcggcgca
gggccaggaggcgcggcggcgacggctgtgggtctggcgctgtgtcggcggaaggacggg
ggcccagcgggcaagttttgggagagcccggagacggtttcccagctggactcggtgcgg
gtctggctgggcaagcactataagaagtatgttcaagcagatgctcctaccaataaaact
ttggcggggctggtagtacagcttctacagtttcaagaagatgcctttgggaaacatgtc
accaatcctgccttcaccaaacttcctgcaaagtgcttcatggatttcaaagctggaggc
accttgtgtcacattcttggggctgcttacaagtataaaaatgaacagggatggagaagg
tttgacctgcagaatccatcccgaatggatcgaaatgtggagatgtttatgaacattgaa
aaaacactagtgcagaacaattgtttaagcagacctaacatctacctcattccagacatt
gaactgaagttggctaacaaactaaaggacattgtcaaaagacatcagggaacattcact
gatgaaaaatcaaaagcctctcatcacatttatcctaatcctacctcaccagaggatgaa
gaatggttgagacctgtgatgaaaaaagacaagcaagtgctagtgcactggggattttac
ccagacagctatgatacttgggtccatgctagtgatattgatgctgaaatcgaagatcct
ccaattccagaaaaaccatggaaagtgaatgcaaaatggattttagacactgatattttc
aatgaatggatgaatgaagaagattatgaggttgatgagaacaagaaaccagttagtttt
cgtcagcgcatctcaacaaagaatgaagagccagtccgtagtcctgagagaagagatagg
aaagcagctgcaagtacaagaaagagaaaacattcaccttctcctcctcctcctactcct
gttgaatcaaggaaaaagactggaaagaaaggacaagctagtctttatgggaagaggaga
ggtcagaaagaagaggatgaacaagaagatctcactaaggatatggaagacccaacacct
gtacctaatatagaggaagtggtacttcctaaaaatgttaacccaaagaaagacagtgaa
aatacaccagttaaaggaggaactgtagcagatctagatgagcaggatgaagaaacagtg
acaacaggaggaaaggaggatgaggatcctagcaaaggtgatcagagtcgatcaattgat
cctggtgaagacaatgtaacagagcagacgaatcacattattattcccagttatgcatcg
tggtttgattacaactgtattcatgtcatagaacgtcgtgctcttcccgagtttttcaat
ggaaaaaacaagtcaaaaactccagaaatatacttggcataccgtaacttcatgattgac
acataccgcttaaacccccaagaatatttaaccagcactgcttgcagacggaatctgaca
ggagatgtctgtgctgttatgagggttcatgcttttttggaacaatgggggcttgttaat
taccaggttgatccagaaagtcgaccaatggcaatgggacctcctccaactcctcacttc
aatgtgctggctgataccccctccgggctagtgcctcttcatctcagaacacctcaggtc
cctgctgctcagcagatgttgaattttcctgagaaaaataaggagaaacctactgattta
cagaactttggccttcgcactgatatttattccaagaaaaccttagcaaaaagtaaagga
gccagtgctggaagagaatggactgaacaggagacactgctacttttagaggctcttgag
atgtacaaagatgattggaataaagtatcagaacatgttggcagtcgaactcaggatgag
tgcatcctccactttctgagacttcctattgaggatccttatcttgagaactcagatgct
tcccttggaccactagcttaccaacctgtccctttcagtcagtcaggaaaccctgtgatg
agcacagttgcattcttagcatctgtggtggatccacgggtggcttctgcagcagctaaa
gctgctttagaggagttttcccgtgtccgggaagaagtgccattggaattagttgaagct
catgtcaagaaagtacaggaagcagcaagagcctctggaaaagtagatccaacatatggt
ctagaaagtagctgcattgctgggacaggtcctgatgagccagagaaacttgatggtact
gaagaagaaaaaatggaaacagagacagatggacaacaaactgaaaaggctgaaaacaaa
ggagaaaatgaaactgatgaaagtgataaagcacaggatggagaaaatgagaaaagtatt
gagaaagaacaggatagtgaagttaatgaagataccaaatcagaagaaaaagatgctgag
gagaataaggaaaacgatccctgtaaagagagggagaatgatactggaaagaagaaagtg
gaacatgagatttctgaaggaaatgtagccacagctgcagcggctgctcttgcctcagct
gccaccaaagcaaagcaccttgctgctgtagaagaaagaaagatcaagtctctagtagcc
ctgctggtggagactcaaatgaagaagctggagataaaactccgtcattttgaggaactg
gaaacaatcatggacagggagaaggaggctttagaacagcaaagacagcagttactcact
gaacgccagaacttccacatggagcagctaaaatatgctgaattaagggctcgccagcaa
atggagcaacagcaacacgggcagaacactcagcagtcacaccagcattctggagggcct
ggtatgaacccaattggagcaccagggcatccaggaatgttgcctcatcagcaaccccct
ccttatcccatgatgcaccatcagatgccccctcctcatccgcctcaaccaggtcagatg
ccaggtcctggttccatgatgcctgggcagcccatgccaggccgtatgattccagctgtt
gcagccaatatccatccttctgggggtggtcctccccaacctgtcatgccaccaatgcct
gggaacatcattggaccacgagtaccccttgcagcacctaatggcatgtatccccctcct
ccgcagcagcagcccccaccacctccacccaccgatggcgtcactcctcctcctgcagca
gcaccagcctcctcggctccctaa

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