Gracilinanus agilis (agile gracile opossum): 123254576
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Entry
123254576 CDS
T07702
Name
(RefSeq) exosome complex exonuclease RRP44-like
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
gas
Gracilinanus agilis (agile gracile opossum)
Pathway
gas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123254576
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gas03019
]
123254576
Messenger RNA biogenesis [BR:
gas03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
123254576
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
Rrp44_S1
CSD2
OB_HELZ2
Toxin_R_bind_C
Dis3l2_C_term
Motif
Other DBs
NCBI-GeneID:
123254576
NCBI-ProteinID:
XP_044539503
LinkDB
All DBs
Position
Unknown
AA seq
956 aa
AA seq
DB search
MVKSRTFLKKTRAGRVLKIVREHYLRDDIGCGTSGCTECWGAQEGQALESWPCNPQSSLC
PQPHYLLPDTNILLHQIDILEDPVIRNVILLQTVLQEVRNQSAPIYKRIRDLISDHTKHF
YTFTNEHHRETYVEQKQGENDNDRNDRAIRVAAKWYNEHMKKMTTDENHPQVIFITNDIK
NKEKAIEEGVPAYTCEDYIKSLKANPELVDRLACLSDEGNEIESRKVIFPEHLPLSKLQQ
GIKSGAYLQGTFRACRENYLEATVWLHGDDEENGEIILQGLRNLNRAIHEDIVAVELLPK
SQWVAPSSVVLQDDGQNGDDEEVKENTLKIAVNEKMLRPSGRVLGIIKRNWRPFCGMLSK
SDIKESRRHLFIPADKRIPPIRIETRQASTLEGQRIIVAMDGWPKNSRYPNGHFVKNLGA
VGDKETETQVLLLEHDIPHQPFSQAVLSFLPKMPWNITEEDMKNREDLRHLCVYSVDPPK
CTDIDDALHYRELENGHLEVGVHIADVSHFIRPGNALDQESAKRGTTVYLCEKRIDMVPE
LLSSNLCSLRSNVDRLAFSCIWEMNHNAEILKTRFTKSAINSKASLTYAEAQMRIDSANM
NDDITTSLRGLNKLAKILKRRRIDAGALILSSPEVRFHVDSETHDPIDLQTKELRETNSM
VEEFMLLANVSVAKKIHEEFSENALLRKHPAPPPSNYEVLVKAAKSKNLDFKTDSAKALA
DSLDQVESPDFPYLNTLFRILTTRCMMQAVYFCSGMDNDFHHYGLASPIYTHFTSPIRRY
ADIIVHRLLAVAIGADSTYPDLTNKHKLADLCKNLNFRHKMAQYAQRASVTFHTQLFFKN
KGTVNEEAYILFVRKSAIVVLIPKYGLEGTVFFEEKEKPKPRLTYDEEMPSLKVEDTVFH
IFDKVKVKITLDSSNLQHQKIHMSLLEPQIPGVNVPTHSTSSNTDEPEKKRRKLEN
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atggtcaagtccaggacattcctgaagaagactagggcgggcagggtgctgaagatagtg
agggagcattatctgcgagatgacataggttgtgggacttcaggctgcactgaatgctgg
ggagcacaggaagggcaggctctggagtcttggccttgcaacccccagagcagcctctgc
cctcagccccactacctcctgcctgacaccaacatattacttcaccagattgatatactt
gaggatccagtcatcagaaacgtaatcttgctccaaacagttctccaggaggtgaggaat
cagagtgcacccatatataagagaatccgtgatttgataagtgatcataccaagcatttc
tacaccttcaccaatgagcatcatagagaaacatatgtagaacaaaaacaaggggaaaat
gataatgatcggaatgatagagctatccgagtggcagcaaaatggtacaatgaacacatg
aagaaaatgacaacagatgagaatcatcctcaagttatcttcataacaaatgacataaaa
aataaagagaaggcaatagaagagggggtcccagcttatacatgtgaagactacataaaa
agtttaaaggcaaaccctgaactggtagatcgtcttgcttgtctatctgatgaagggaat
gaaatagaaagccgaaaagtaatatttccagagcatcttcccctgagtaagttacagcaa
ggcataaaatctggtgcataccttcaaggaacattcagagcatgtagagaaaattatctt
gaagccacagtatggcttcatggagatgatgaagagaacggagagatcatcctccaagga
cttagaaacttgaatcgagctattcatgaggacattgtagctgtagagcttttgcccaaa
agtcagtgggtagcaccatcttctgtggtcttacaagatgatggacaaaatggtgatgat
gaagaagtaaaagaaaacactctaaaaattgctgtgaatgagaaaatgttaagaccttca
ggaagagtgttaggtataataaagaggaactggaggccattttgtggcatgctttccaag
tctgatattaaggagtcaagaaggcatctctttatacctgctgacaagagaatacctcca
attcgaatagaaacaagacaagcttcaaccttagaaggacaaagaattattgttgcaatg
gatggttggcccaagaattctagatatcctaatggtcactttgtaaaaaatttaggtgct
gttggtgataaagagactgaaacacaagttcttcttcttgaacatgatattccccatcag
cctttctctcaggctgttcttagtttcctgccaaagatgccttggaacatcactgaagag
gacatgaaaaatagagaagatctgagacatctttgtgtttatagtgtggatcctccaaag
tgtactgatatagatgatgctttacattatcgagaactagaaaatggacatctagaggtt
ggtgttcacattgcagatgttagccacttcattcgaccaggaaatgctttggatcaagag
tcagctaagagaggaacaactgtatatctttgtgaaaaaagaattgatatggtgccagaa
ttgctgagctctaatttatgctctttgagatcgaatgtggacagacttgccttttcatgt
atttgggaaatgaatcacaatgctgaaattttaaaaacaagatttacaaaaagtgcaatt
aattcaaaggcctcacttacatatgcagaagctcaaatgagaattgattcagcaaacatg
aatgatgatatcaccactagtctccgtggactaaataaactagcaaaaattctgaagagg
cggagaatcgatgcaggagctttgatactttcttctccggaagttcgatttcatgtggat
agtgaaactcatgaccctatagatcttcagacaaaggaacttagagaaacaaattccatg
gtggaggaatttatgttgcttgccaatgtttctgttgcaaagaaaatccatgaagaattt
tctgaaaatgccttgctcagaaaacatcctgctcctcctccgtcaaattacgaagttctt
gtgaaggcagcaaaatccaagaatttggattttaagactgattcagcaaaggctttggct
gactcattagatcaagtagaatctcctgattttccatatctaaacacactcttcaggata
ttaactactcgctgtatgatgcaggcagtttacttctgctctggaatggataatgatttt
catcactatggcttagcatcaccaatatatacacattttacttcacccatcagaagatac
gcagatataattgtccatcggcttttggcagtagctataggagcagattccacttatcca
gatctgacaaacaagcacaaactagcagatttatgcaaaaatctcaatttcagacacaaa
atggcacaatatgcacagcgagcatctgttacatttcatacacagttgttcttcaaaaat
aaaggaacagtgaacgaagaagcctatattttgtttgtaaggaagagtgctattgtggta
ttaattccaaaatatggtttagaaggaacagtattttttgaggaaaaagaaaaaccaaag
ccaagacttacttatgatgaggagatgccctcactaaaagtagaagatacagtatttcat
atttttgataaagttaaagtgaaaatcaccttagactcatccaatcttcagcatcagaaa
attcatatgtccctgctagaaccccagataccaggagtaaatgttcctacccattctaca
agctcgaacactgacgaaccagaaaaaaagaggagaaagctagaaaattag
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