Gracilinanus agilis (agile gracile opossum): 123256108
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Entry
123256108 CDS
T07702
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
gas
Gracilinanus agilis (agile gracile opossum)
Pathway
gas03030
DNA replication
gas03410
Base excision repair
gas03420
Nucleotide excision repair
gas03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
123256108 (LIG1)
03410 Base excision repair
123256108 (LIG1)
03420 Nucleotide excision repair
123256108 (LIG1)
03430 Mismatch repair
123256108 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gas03032
]
123256108 (LIG1)
03400 DNA repair and recombination proteins [BR:
gas03400
]
123256108 (LIG1)
Enzymes [BR:
gas01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
123256108 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
123256108 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
123256108 (LIG1)
DNA replication proteins [BR:
gas03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
123256108 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
123256108 (LIG1)
DNA repair and recombination proteins [BR:
gas03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
123256108 (LIG1)
NER (nucleotide excision repair)
Other NER factors
123256108 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
123256108 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
PucR
DDR
Motif
Other DBs
NCBI-GeneID:
123256108
NCBI-ProteinID:
XP_044540733
LinkDB
All DBs
Position
Unknown
AA seq
661 aa
AA seq
DB search
PPDPTTYNPSKSGYHPVKDACWKPGQRVPYLVVARTFEKIEEVSARLRMVETLSNLLRSV
AALTPADLLSVLYLSLNRLGPPQQGLELGVGDGVLLKAVAQATGRKLEAIRAEVAERGDV
GLVVEASRSTQRTMLPLPALTAAGVLSKLRDIARLSGSACMSKKIDIIKSLFVACRHSEA
RFIARALSGRLRLGLAEQSVLAALSQAVTLTPPGQEFPPAVVDAGKGKSAEARKAWLEEK
GLVLKQTFCEVPDLDLIIPALLEHGLDQLPQHCQLTPGVPLKPMLAHPTRGIREVLKRFE
EAAFTCEYKYDGQRAQIHVLADGHVKIFSRNQEDNTGRYPDIISRIPKIKRPSVVSCILD
SEAVAWDRAKKQIQPFQVLSTRKRKEVEESDIQVQVCVYAFDLIYLNGQSLVREPLSRRR
QLLRENFIETEGEFVFATSLDTEDTEQIADFLEQSVKDSCEGLMVKSLDSDATYEIAKRS
HNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLAALDEDSEEFQAICKLGTG
FSDEELEEHYQTLQALVIPAPRSYVRAEGAEVPDHWLEPTTVWEVKCADLSISPIYPAAR
GLVESDKGISLRFPRFVRVREDKMPEEATSSARVARLYKKQQQVQNQLDSNSSDSDPEDF
Y
NT seq
1987 nt
NT seq
+upstream
nt +downstream
nt
gccccccgatccaaccacctacaacccctccaagagcggctaccaccccgtcaaggatgc
ctgctggaagccgggccagcgggttccctaccttgtcgttgcgcgaacatttgagaagat
cgaggaagtctctgcccggcttcggatggtggagaccctgagcaacctgctgcgctcggt
ggccgccctgacgcccgcagacctgctctccgtcctctacctgagcctcaaccggctggg
gcccccccagcagggcctggagctcggggtgggggacggcgtgctcctcaaggccgtggc
ccaggccacaggccgaaagctggaagccatccgggcggaggtggcggagcgcggcgacgt
ggggctggtggtggaggcgagccgcagcacgcagcgcaccatgctgccgctgcccgccct
cacggcggccggagtcctgagcaagctgcgagacatcgcccgcctgtcgggcagcgcctg
catgtccaagaagatcgacatcatcaagagcctgttcgtcgcctgtcgccactcagaggc
ccgcttcatcgccagggccctgagcgggcggctgcgtctgggtctcgcggagcagtcggt
cctggctgcgctcagccaggccgtgaccctcactccccctggccaagaatttcccccggc
cgtggtggacgccgggaaaggcaagtccgcagaagccaggaaagcatggctggaggagaa
ggggctcgtcctgaagcagaccttttgcgaggtgccggacctggacctgattatccccgc
cctgctcgagcatgggctggaccagctgccccagcactgccagctgaccccaggagtgcc
cctgaagcccatgctggcccaccccacccggggcatcagggaggtgctgaagcgcttcga
ggaggccgccttcacgtgcgaatacaagtacgacgggcagcgggcacagatccacgtcct
ggcagacgggcacgtgaagatatttagccggaaccaagaggacaacacgggccggtaccc
agacatcatcagccgcatcccgaagataaagcgcccttccgtcgtctcctgcatcttgga
ctcagaggctgtggcctgggaccgggcaaagaagcagattcagcccttccaggtgctcag
cacccgcaagcgcaaggaggtggaggagtcagacatccaagtccaagtgtgtgtgtacgc
ctttgacctcatctacctcaatgggcagtccctggtccgggagccgctgtcgcggaggcg
gcagctgctccgggagaacttcatcgaaaccgaaggcgagtttgtttttgccacgtctct
ggacacggaggacacggagcagatcgccgacttcctggagcagtcagtgaaagattcctg
cgagggcctgatggtgaagagcctcgacagcgacgccacgtacgagattgccaagagatc
ccacaattggctcaagctgaagaaggactacctggacggtgtcggggacacgctggacct
ggtggtgatcggggcctatctgggccgggggaaacgggccggacgatacgggggctttct
cctggctgccttggatgaggacagcgaagagttccaggccatttgcaagctgggcacagg
tttcagcgatgaagaattagaggagcattaccagaccctccaggccctcgtcattcctgc
tcctcgttcgtacgtccgggccgagggagccgaggtccccgaccactggctagaacccac
caccgtgtgggaggtgaagtgtgccgatctctccatctcccccatctacccggcggcccg
gggcttggtggagagcgacaagggcatctccctgcgcttcccccgattcgtccgagtccg
agaagacaagatgccagaagaagcgacctcgagtgcccgggtggcccgtttgtataagaa
gcagcaacaggttcagaaccagctggacagcaactcctcagactcggatcctgaagattt
ctactag
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integrated database retrieval system
