Gracilinanus agilis (agile gracile opossum): 123256216
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Entry
123256216 CDS
T07702
Name
(RefSeq) exosome complex exonuclease RRP44-like
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
gas
Gracilinanus agilis (agile gracile opossum)
Pathway
gas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123256216
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gas03019
]
123256216
Messenger RNA biogenesis [BR:
gas03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
123256216
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
Rrp44_S1
CSD2
OB_HELZ2
Toxin_R_bind_C
Dis3l2_C_term
Motif
Other DBs
NCBI-GeneID:
123256216
NCBI-ProteinID:
XP_044540822
LinkDB
All DBs
Position
Unknown
AA seq
956 aa
AA seq
DB search
MVKSRTFLKKTRAGRVLKIVREHYLRDDIGCGTSGCTECWGAQEGQALESWPCNPQSSLC
PQPHYLLPDTNILLHQIDILEDPVIRNVILLQTVLQEVRNQSAPIYKRIRDLISDHTKHF
YTFTNEHHRETYVEQKQGENDNDRNDRAIRVAAKWYNEHMKKMTTDENHPQVIFITNDIK
NKEKAIEEGVPAYTCEDYIKSLKANPELVDRLACLSDEGNEIESRKVLFPEHLPLSKLQQ
GIKSGAYLQGTFRASRENYLEATVWLHGDDEENGEIILQGLRNLNRAIHEDIVAVELLPK
TQWVAPSSVVLQDDGQNGDDEEVKENTLKIAVNEKMLRPPGRVLGIIKRNWRPFCGMLSK
SDIKESRRHLFIPADKRIPPIRIETRQASTLEGQRIIVAMDGWHKNSRYPNGHFVKNLGA
VGDKETETQVLLLEHDIPHQPFFQAVLSFLPKMPWNITEEDMKNREDLRHLCVCSVDPPK
CTDIDDALHYRELENGHLEVGVHIADVSHFIRPGNALDQESAKRGTTVYLCEKRIDMVPE
LLSSNLCSLRSNVDRLAFSCIWEMNHNAEILKTRFTKSAINSKASLTYAEAQMRIDSANM
NDDITTSLRGLNKLAKILKRRRIDAGALILSSPEVRFHVDSETHDPIDLQTKELRETNSM
VEEFMLLANVSVAKKIHEEFSENALLRKHPAPPPSNYEVLVKAAKSKNLDFKTDSAKALA
DSLVQVESPDFPYLNTLFRILTTRCMMQAVYFCSGMDNDFHHYGLASPIYTHFTSPIRRY
ADIIVHRLLAGAIGADSTYPDLTNKHKLADLCKNLNFRHKMAQYAQRASVTFHTQLFFKN
KGIVNEEAYILFVRKSAIVVLIPKYGLEGTVFFEEKDKPKPRLTYDEEMPSLKVEDTEFH
IFDKVKVKITLDSSNLQHQKIHMSLLEPQIPGVNVPTHSTSSNTDEPEKKRRKLEN
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atggtcaagtccaggacattcctgaagaagactagggcgggcagggtgctgaagatagtg
agggagcattatctgcgagatgacataggttgtgggacttcaggctgcactgaatgctgg
ggagcacaggaagggcaggctctggagtcttggccttgcaacccccagagcagcctctgc
cctcagccccactacctcctgcctgacaccaacatattactccaccagattgatatactt
gaggatccagtcatcagaaacgtaatcttgctacaaacagttctccaggaggtgaggaat
cagagtgcacccatatataagagaatccgtgatttgataagtgatcataccaagcatttc
tacaccttcaccaatgagcaccatagagaaacatatgtagaacaaaaacaaggggaaaat
gataatgatcggaatgatagagctatccgagtggcagcaaaatggtacaatgaacacatg
aagaaaatgacaacagatgagaatcatcctcaagttatcttcataacaaatgacataaaa
aataaagagaaggcaatagaagagggggtcccagcttatacatgtgaagactacataaaa
agtttaaaggcaaaccctgaactggtagatcgtcttgcttgtctatctgatgaagggaat
gaaatagaaagccgaaaagtactatttccagagcatcttcccctgagtaagttacagcaa
ggcataaagtctggtgcataccttcaaggaacattcagagcaagtagagagaattatctt
gaagccacagtatggcttcatggagatgatgaagagaacggagagatcatcctccaagga
cttagaaacttgaatcgagctattcatgaggacattgtagctgtagagcttttgcccaaa
actcagtgggtagcaccatcttctgtggtcttacaagatgatggacaaaatggtgatgat
gaagaagtaaaagaaaacactctaaaaattgctgtgaatgagaaaatgttaagacctcca
ggaagagtgttaggtataataaagaggaactggaggccattttgtggcatgctttccaag
tctgatattaaggagtcaagaaggcatctctttatacctgctgacaagagaatacctcca
attcgaatagaaacaagacaagcttcaaccttagaaggacaaagaattattgttgcaatg
gatggttggcacaagaattctagatatcctaatggtcactttgtaaaaaatttaggtgct
gttggtgataaagagactgaaacacaagttcttcttcttgaacatgatattccccatcag
cctttctttcaggctgttcttagtttcctgccaaagatgccttggaacatcactgaagag
gacatgaaaaatagagaagatctgagacatctttgtgtttgtagtgtggatcctccaaag
tgtactgatatagatgatgctttacattatcgagaactagaaaatggacatctagaggtt
ggtgttcacattgcagatgttagccacttcattcgaccaggaaatgctttggatcaagag
tcagctaagagaggaacaactgtatatctttgtgaaaaaagaattgatatggtgccagaa
ttgctgagctctaatttatgctctttgagatcgaatgtggacagacttgccttttcatgt
atttgggaaatgaatcacaatgctgaaattttaaaaacaagatttacaaaaagtgcaatt
aattcaaaggcctcacttacatatgcagaagctcaaatgagaattgattcagcaaacatg
aatgatgatatcaccactagtctccgtggactaaataaactagcaaaaattctgaagagg
cggagaatcgatgcaggagctttgatactttcttctccggaagttcgatttcatgtggat
agtgaaactcatgaccctatagatcttcagacaaaggaacttagagaaacaaattccatg
gtggaggaatttatgttgcttgccaatgtttctgttgcaaagaaaatccatgaagaattt
tctgaaaatgccttgctcagaaaacatcctgctcctcctccgtcaaattacgaagttctt
gtgaaggcagcaaaatccaagaatttggattttaagactgattcagcaaaggctttggct
gactcattagttcaagtagaatctcctgattttccatatctaaacacactcttcaggata
ttaactactcgctgtatgatgcaggcagtttacttctgctctggaatggataatgatttt
catcactatggcttagcatcaccaatatatacacattttacttcacccatcagaagatac
gcagatataattgtccatcggcttttggcaggagctataggagcagattccacttatcca
gatctgacaaacaagcacaaactagcagatttatgcaaaaatctcaatttcagacacaaa
atggcacaatatgcacagcgagcatctgttacatttcatacacagttgttcttcaaaaat
aaaggaatagtgaacgaagaagcctatattttgtttgtaaggaagagtgctattgtggta
ttaattccaaaatatggtttagaaggaacagtattttttgaggaaaaagacaaaccaaag
ccaagacttacttatgatgaggagatgccctcactaaaagtagaagatacagaatttcat
atttttgataaagttaaagtgaaaatcaccttagactcatccaatcttcagcatcagaaa
attcatatgtccctgctagaaccccagataccaggagtaaatgttcctacccattctaca
agctcgaacactgatgaaccagaaaaaaagaggagaaagctagaaaattag
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