Gracilinanus agilis (agile gracile opossum): 123256790
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Entry
123256790 CDS
T07702
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
gas
Gracilinanus agilis (agile gracile opossum)
Pathway
gas03013
Nucleocytoplasmic transport
gas03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gas00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123256790 (UPF1)
03015 mRNA surveillance pathway
123256790 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gas03019
]
123256790 (UPF1)
Enzymes [BR:
gas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
123256790 (UPF1)
5.6.2.5 RNA 5'-3' helicase
123256790 (UPF1)
Messenger RNA biogenesis [BR:
gas03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
123256790 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
123256790 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
123256790
NCBI-ProteinID:
XP_044541289
LinkDB
All DBs
Position
1:complement(731546458..731699088)
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AA seq
1154 aa
AA seq
DB search
MGREPRGPSSIDRPACSSFLGEHFYPRGPAICPHHRRSWLWPPLPLPIGAEKEGNGKHDP
FPGNAPCSSPGVPSQTQTPPGGPGGGGGGGGSGAGGPGAAGVGGAAGQLDAQVNGPDGIL
QNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSKKWF
CNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSV
VVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINK
LEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQ
TQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVP
DNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHK
LLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT
IVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQ
IRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPR
LAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSL
FERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDK
PMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLV
QYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALT
RARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTIN
PGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMISTGPSHVTAMNIPIP
FNLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGRQKNRFGIPGTSQSNLPNSQASQDV
VSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGE
RAYQHGGVTGLSQY
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgggcagggagccacgtgggccctccagcatagacaggccagcttgctcctcgtttctg
ggggaacatttctatccccgtggtccggccatctgcccccaccaccgtcgctcttggctc
tggccaccgctacccctgcccattggagccgagaaggagggaaatgggaaacacgatccc
tttccagggaatgccccttgttccagcccaggagtccccagccagacccagacgcccccc
gggggccccgggggcggcggaggcggtgggggcagcggcgcgggcgggcccggagccgcg
ggcgtcgggggagccgcgggccagctcgacgcgcaggttaatggacctgatggtatccta
cagaatggtgctgtggatgacagtgtagctaaaaccagccaactgttggccgaattgaat
tttgaagaagatgaagaagatacttactatacaaaggatctccctgtgcatgcttgcagt
tactgtggcatccatgacccggcttgtgtggtttactgcaatactagcaagaaatggttt
tgtaatggacgtggaaacacttctggcagccacattgtaaatcatcttgtaagagcaaaa
tgcaaagaagttactctccacaaggatgggcccctgggggagacagtgctggagtgttat
aactgtgggtgtcgaaatgtgtttctccttggcttcatacctgccaaagctgattcggta
gtggtactcctctgcaggcaaccttgtgccagtcagagcagcttaaaggatatcaattgg
gacagctcacagtggcagcctctgatccaagatcgctgttttctttcctggttggtaaag
attccatctgagcaggaacagctgagagcacgccagattacagcccaacaaattaacaaa
ctagaggagctttggaaggaaaatccttcagcaacactcgaagatctagaaaagccaggt
gttgatgaggaaccacagcatgtcctgctgcggtatgaggatgcttaccagtatcaaaat
atattcggtccactcgtcaaactggaagcagattatgataagaaacttaaagaatcccag
acccaagataacatcacagtcagatgggacctgggcctcaacaagaagagaatcgcttac
ttcaccttgcccaagactgactctgatatgcgtcttatgcagggagatgaaatctgcctt
cgctataaaggtgacctcgcacctctgtggaagggaatcggccatgtcattaaagtccca
gataattatggtgatgaaattgcaattgaattgaggagtagtgttggggctcctgtagaa
gttactcataacttccaagtggattttgtatggaaatccacttcatttgacagaatgcag
agtgcattaaaaacatttgctgtagatgaaacctcagtatctggctacatttaccacaaa
ctgttgggtcatgaagtagaggatgtgattattaaatgccaactgccaaaacgttttaca
gcacaaggactccctgacctcaatcattctcaggtatatgcagtaaagactgttttgcag
cgacctttgagcctcatccagggaccacctggtacagggaagactgtaacatcagctaca
attgtctaccatttggctaggcaaggaaatgggcctgtgctagtttgtgctccaagcaat
atagctgtggatcagttaactgagaagattcaccagactggtttgaaagttgttcgtctt
tgcgctaaaagccgagaagcaatcgattctcctgtatcttttttggctctacacaaccag
atcaggaatatggatagcatgcctgaactccagaaattacaacaattgaaagatgaaacg
ggcgaactttcatctgctgatgaaaagcgttatcgagcattgaaacgtacagctgaacga
gaattgcttatgaatgcagatgtgatttgctgcacatgtgtgggagcaggtgatccaagg
cttgccaagatgcagttccgatccattttaattgatgaaagcacacaggctaccgaacca
gagtgtatggtaccagttgttcttggagccaaacagttgatcctcgtaggagatcattgc
cagctgggtcctgtggtcatgtgcaagaaagctgcaaaagcaggcttgtctcagtcgctg
tttgagcggctagtggtgttaggaatccgtccaattcgcctgcaggtgcagtatcgaatg
catcctgcccttagtgctttcccatcaaacatcttctatgaggggtcccttcagaatggc
gttactgcagctgatcgtgtgaaaaagggatttgatttccagtggccccagccagataaa
ccaatgttcttctatgtgacccagggccaagaagaaattgccagttcaggcacctcttat
ttgaacagaacggaagcagcaaatgtggaaaagataactacaaagctattaaaagctggt
gccaagccagatcaaattggtattattacaccttatgagggtcagcgatcttatctggta
caatacatgcaatttagtggctccctacatacaaaactctaccaggaagtggaaatagct
agtgttgatgcattccagggacgagagaaggacttcatcattctctcctgtgtgagagcc
aatgagcaccaaggaattggatttttaaatgatcccaggcgtcttaatgtggctcttact
cgagccagatatggagtaattattgttggcaacccaaaagctctctccaagcaaccactt
tggaatcatctattgaactactacaaggaacagaaagtactggtagaaggacctctgaac
aacctccgagagagcctcatgcagttcagcaagccccggaaacttgtcaataccatcaac
cctggagcccggttcatgactacagctatgtatgatgcacgtgaagctatcatcccagga
tctgtctatgatcggagcagtcaaggacgtccatcgaacatgtattttcaaactcacgat
cagattgggatgattagcactggacccagtcacgtcactgctatgaacattcctattcct
ttcaaccttgtgatgccaccaatgccaccaccaggctatttcggccaagccaatggacca
gctgcaggccgtgggacaccaaaggggaaaactggtcgtgggggacgccagaaaaatcgc
tttggaattcctggaactagccagtcaaatcttccaaatagtcaggccagtcaagatgtg
gtatcccagcccttctcccagggtccattgactcagggctatatttccatgagtcagcca
tcacagatgagccagccagggctctcccaaccagaattatcccaggacagttaccttggt
gatgagtttaaatcgcagattgatgtggctctgtcacaagactctacataccaaggagaa
cgggcataccaacacggtggagtgacagggctgtcacagtattag
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