Gasterosteus aculeatus (three-spined stickleback): 100174896
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Entry
100174896 CDS
T07457
Symbol
hif-1a
Name
(RefSeq) hypoxia-inducible factor 1 alpha
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04137
Mitophagy - animal
gat04140
Autophagy - animal
gat04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
100174896 (hif-1a)
04137 Mitophagy - animal
100174896 (hif-1a)
04148 Efferocytosis
100174896 (hif-1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gat03000
]
100174896 (hif-1a)
Transcription factors [BR:
gat03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
100174896 (hif-1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
HIF-1
PAS
PAS_9
PAS_4
PAS_2
HLH
Motif
Other DBs
NCBI-GeneID:
100174896
NCBI-ProteinID:
NP_001254578
UniProt:
A5H736
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All DBs
Position
XV:6099061..6108538
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AA seq
756 aa
AA seq
DB search
MDTGIVPEKKRVSSERRKEKSRDAARCRRGKESEVFYELAQELPLPHSVTSGLDKASIMR
LIISYLCMRKLLHNDEPVTEEETELESQINSAYLKALDGFLLVLSEDGDMIYLSENVNKC
LGMAQFDLTGQSVFDFIHPCDQEELREMLVHKTGSKKAKEADTKRSFFLRMKCTLTNRGR
TVNVKSATWKVLHCSGHVRVHDNPTEETSNGHKEPPAPYLVLICDPIQHPSNIEVPLDTK
TFLSRHTMDMKFTYCDERITELMGYDPEDLLDRSVYEYYHALDSDHLNKTHHNLFAKGQV
STGQYRMLAKRGGFVWVETQATVIYNNKNSQPQCVVCVNFVLSGIQEEKLILSMDQIEGV
KPVTEELLQQAEKEVAESSQPNLSQSPLKDEEKSPELDVIKLFTRAAEVDSPASLYDQLK
AEPEALTLLAPAAGDAVISLDFSCPESEILLVKEVPLYNDVMLPSTGDQLTPPLSPLPLS
ETLRVTAVSSEDAKAKSYAPARSTSSTIHRSSKADSPLDFCYPMDSEMSSDFKLDLVERL
FAIDTETKTPFTTQAMEDLDLEMLAPYIPMDDDFQLRSLTPEESLSSGSVKSLQGSPVHV
TQDIHSYPSSPFSAPGSRTASPAPLQAPQPATIAAKRIPQPDKEVSLMTLAAANSQRKRK
LGDAIQTIGQKTLPLEQVEQGKKLKASPSETTRTIFLLPSDLASRLLGSTSDGTSSPFTL
PQLTRYDCEVNAPLQGRQSLLQGEELLCALDLVNAI
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atggacacaggaattgtaccagaaaagaaaagggtgagctcggagcggagaaaggagaag
tcgagggatgcggcgcgatgccggcgtggaaaggagtcggaggtgttctacgagctggca
caggagctgccgctgccccacagtgtcacctccggcctggacaaggcctccataatgagg
ctcatcatcagctacctgtgcatgagaaaactgctccacaacgatgagccggtgacagag
gaggaaactgagctggaatcacagataaacagcgcctacctaaaggctttggacggcttt
cttttggtcctgtcggaagatggagatatgatctatctctccgagaatgttaacaagtgt
ctcgggatggcacagtttgacctgactggacaaagtgtctttgacttcatacatccctgc
gaccaggaagagctgagggagatgctggtccacaaaaccggctccaaaaaggccaaggag
gcagacacgaagcgcagcttcttcctgcgaatgaaatgcactctcaccaatagggggcgc
actgtcaacgtcaaatcagctacatggaaggtgctccactgctctggtcatgtgcgtgta
catgacaaccccaccgaggagacctccaacgggcacaaggagcccccagccccctacctg
gttctgatctgtgatcccatccaacatccctccaacattgaggtccctcttgacaccaag
acttttctcagccgccatacgatggacatgaagttcacgtactgcgatgaaaggatcact
gagctcatgggatatgatccagaggacctgttggatcgttctgtgtacgagtactatcat
gctctggactcggaccatcttaacaagactcaccacaacttgtttgcaaagggccaagtc
agcacaggccagtaccggatgttggccaagagaggaggctttgtgtgggtggaaactcaa
gccactgtcatctacaacaacaagaactcccagccacagtgtgttgtctgtgtcaacttt
gtgctcagtggcatccaggaggagaaactgatactgtccatggatcaaatcgagggtgtg
aagccagtgacggaggagctgctgcagcaggcagaaaaggaagttgctgagagcagccag
cccaacttgtctcagtccccgctcaaggacgaggagaagagcccggagctggatgtgatc
aaactgttcacgcgggcagcagaggtcgactctccagccagcctgtacgaccagctgaag
gcggagccggaggccctcactctgctggcccccgctgctggagacgccgtcatctccctg
gacttcagctgccctgagtccgagatcctgttggtgaaggaggtccccctgtacaatgat
gtgatgcttccctccaccggcgaccagttgactccgcctctctcccctctgccgctgagc
gagactctccgtgtcaccgccgtcagctctgaggatgctaaagctaagagctacgctcca
gcccggtccacctcatcgaccatccaccgctcctcaaaggccgacagtccgctggacttt
tgttaccccatggactcagagatgagctcagatttcaaactggacttggtggagaggctg
tttgcaattgatacagagaccaagacccccttcaccacccaggcaatggaagacttggat
ctggagatgttagctccttacatccccatggatgatgacttccagctgcgcagtctgacc
ccggaagagtctttgtctagtggatcagtcaaatcccttcaaggttctccagtccacgtg
acacaggacatccacagctatcccagctccccattcagtgcaccaggcagtcgcacagct
tcaccagcaccgcttcaagcccctcagccggccaccatcgctgccaagagaatcccgcag
ccggacaaagaggtctcgctcatgaccctggcagctgcaaattcccaacgcaaaaggaag
ctgggtgatgcaatacagactattggacagaagacgttgcctctggaacaggtggagcag
ggcaaaaagctgaaggcctcaccgtcagaaacgaccaggaccatatttctgctgccgtca
gatttggcgagtcgtcttctgggaagcacatcggacggcaccagttcccctttcaccctg
ccacagctcacccgctacgactgcgaggtcaacgcccccctgcagggtcgtcagtccctg
ctgcagggagaggagctgctgtgcgctctggacctcgtcaacgcaatttaa
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