Gasterosteus aculeatus (three-spined stickleback): 120807643
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Entry
120807643 CDS
T07457
Symbol
si:ch211-186j3.6
Name
(RefSeq) LOW QUALITY PROTEIN: neural-cadherin
KO
K27892
neural-cadherin
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
gat04515
]
120807643 (si:ch211-186j3.6)
Cell adhesion molecules [BR:
gat04515
]
Cadherins
Cadherin related
120807643 (si:ch211-186j3.6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Laminin_G_2
Laminin_G_1
Ig_Shg
Cadherin_CELSR2_9th
Cadherin_pro
EGF
CADH_Y-type_LIR
hEGF
Fibulin_C
Big_9
cEGF
Motif
Other DBs
NCBI-GeneID:
120807643
NCBI-ProteinID:
XP_040015818
LinkDB
All DBs
Position
II:complement(2355366..2574437)
Genome browser
AA seq
2950 aa
AA seq
DB search
MIWVAFLPLWLSCAHANGTAEQVPFFHGHVFENASPGSRVNGLSVPLKRLNSQRLCGAEG
PAAHFQLLGDGSENFRVFAHHKRGHVLLKTCGVLDREERAEYALRLGLCCGECAEPSLEV
DEASPAVAEVASIKVDVLDTNDHQPTFPGAGVKLSLDDATALRTAIYTVTARDGDSGKNA
ELIYFALPRNGSFYAVPKTGDILLVDSILGLGEPIKFEVFARDRGWPPRTSQSVAVEVSP
RQWPVAPSAQPGNGKPKTPITVAARRSRSVLGPESPVLINVSEDAAIGSVVMNLGPVRFQ
SAAFELVEPGADSSPVSVSRDSGDMVISRRLDRETEPLLEITVKVQDKRGPEWYLVRVEL
TVTDVNDNIPEWVMVPAPYLAVVSPDATAGALVYKLHAEDGDEGNNGEVEYFLSDGGDGR
FEVDRKSGHVQTTGLPLQRDREYLLTVVAADRLGSRSAPVVVSVVAGARPPQFTNASFTI
GIPENTPEGQPFLVTPAVSFQKKLISYSLLINPSSLFSISAETGEISLTRPIDYESDQHR
YLLLVRASEGLDSMSSAAEVRVVIVDENDCVPEFLQSIYSKDGVPETVTTATSLLQVSAN
DCDSEENAELTYYTLSPDFTISPHGTIFPAGPLDYERPNHLYEFVVMAVDKGEVPRTGTT
TVRIRMANVNDEAPEFSQHIYRTFVSEDAGPNTLVATVLAKDPDGDGITYVITTGNEEGN
FVIDSQKGLIRLRSSPPPHLQGVEYVLNVTAEDDNASGGPQALSSTAQVIVGVDDVNNNK
PVFEKCQQYRESTSVLENQPAGTFVLQVHAVDADEGSNGRVTYGFMHKDSTVPAFSIHPD
TGVIVTARRYDRERQREYAVTVTATDQAVDPLIGICQLNVLILDQNDNSPKFENIRYEYF
LREDTMIGTSFLRVAAHDDDFGTNAAVTYSMSREQPEYLRVNPLTGWVFVNQPISQRTYI
TRDIVATDGGNMSSSVELSVTITNVKNQPPQWDKDSYSVVIPENTVRDTAIVNIKATSPL
GDPRVTYNLEDGMVPETNMPVRFYLTPNREDGSASILVAEPLDYETTRNFMLRVRVQNVA
AVPLAAFTTVYINVTDVNDNVPFFTSSIYEASVTEGAESGTLVFQVSANDLDLGLNGKIS
YSLLEDRSGDHQYFRIDPELGLIYSQTVFDRETKSSYLLEVQSVDGWESARPGKHGQPNS
DTAYVRVFISDVNDNKPAFAQVSYEVDVDEDADVGFAVLTVSANDGDEGGNAKLRYQITS
GNTGGVFDVEPEVGTIFIAQPLDYEQNKRYKLLVLASDGKWEDYTTVAVNVMNKNDEAPV
FTVNEYYGSVTEELDGSPVFVLQVTASDPDKDADQEALRYSLHGQGAESEFIIDEVTGKI
YAQRTLDREERAVWRFVVLATDEGGEGLTGFTDVIINVWDINDNAPVFTCAPSCHGDVAE
NSAAGTSVMEMTATDLDDAAVGQNAVLSYRIMGSLDTTSIQVGEVPTFSEMFTINPTTGT
ITVAMGGLDREQVESYLLVVEARDGGGMTGTGTATVQIKDVNDHAPRFTERSCLARISEN
AETNAEVLELTAEDSDTGENAQLTFSVVAGDQEQKFYMVSHKQEQRGTLRLKKRLDYERH
SEQRFNLTLKVEDMDFSSLLHCAVEVEDSNDHAPVFIPHLLALAPLPEDIDVGTSVARLV
ASDSDSGQNRDMTYSLSEDSDPDGLFTIDQSGVLSVARLLDRERISQHHLVVIATDHGVP
PLTGSATVQLPLLDVNDNGPEFEAAYSPVVFENAAGPQVVQLNQTSTLLHAVDRDSPENG
PPLHFTVPSEYRHSNDFYLQDNLNGTATLTALRTFDRERQKEFLLPIIMSDSGHPAKTVT
TTLTVTIGDQNDHAHVAGEKKIFINSHRGRMPTTVLGKVYSPDPDDWDNKTYVFEGHIPS
YFILNKRTGFLIIKENTPPDVYHFQVRVSDGVWPDAVSSVTVHVRELRDDAIYNSGSLRL
ADITAREFIELRGKQRSRYELLLDFLSEMLSVPPDDVNIFSLMDVKERMLDVRFAVRGGP
SFLQPEKIHGYVAAHKQKLQSFLQVNVFQVRVDECPGSECAGAGGCTSALNVRDTPTVVD
CGTMSLVSVTVESTAACLCPGREQSHQPCTSYPRNPCFNGGVCVDTQHGYRCQCPSQFEG
PECQQNKHSFHGNGYAWFPPVMPCFESHVSLEFITEVADGLLLYNGPLAQLQAWDHEDFM
AIELIDGTPTLKINHGSGTVVLQLPGNVNVADRRWHRLDVRSNSKEVRFTLDRCSGAAVM
EMEGLGSWVTTEDHSSCEVTGVTPNADRHLNMSQVLQLGGVNEDIPYIYPQLQHKHFTGC
IRNLIVDSKLYDLGSPADSQSSSSGCLTTDSSCVNMGYPSCGHRGRCHGEWGSFSCQCVP
GYAGHHCEEEAPEYTFDGHSHVHYQLASPLSARRTWVQVLVRTRKHSSTILNLSSKELSE
YIRLEIFQGLLCVFYNLGDGDFNLTLPTYRLDNGDWHEVFLDRHDNEMTLRLDGGGGQRE
VKGSRGRSREIIIDPTVVMLGNTFPSGINKSFQGCMRDARLNGRYLPLDSQTRDGVSQVS
IQGLSPGCSSDSCKRNQCSAPFTCVDLWRVHECRCPPGHMIRVNGTRKSCVYTLCATRPC
HRGTCVAQSPSKFTCHCPEGYRGRHCETPLAIYREDVGLSFSSLFAICICFMALLVLLLG
IFSYTRWRSYKGLKEGVYHVSAHHDGWEDIRENVLNYDEEGGGEEDQNAYDMAELQKSLQ
PSPAQSVQYCRSRALHHPPPPLHHHHLLHQAPPAPSAAQALDLLSRTSSSTTLPPSAAST
TSTATTGTNGSLRRDVPPTRLPAQAQARSTKLARRSLSFSSQDLARYLCEIIRDADQHRD
TGPFDSLQVFSTEGGGSPAGSLSSFSSAGLDGNRGGEGVEEGRREETLGEWGPRFEKLRA
LYERAEASDL
NT seq
8853 nt
NT seq
+upstream
nt +downstream
nt
atgatttgggtcgcgtttctacctttgtggctttcgtgcgcacacgctaacgggaccgcg
gagcaggtgccgttctttcacgggcacgtgtttgagaacgcgtccccgggctcccgggtc
aacggactgagcgtcccgttaaagcggctcaactcgcagaggctgtgcggcgccgaggga
cctgcagcccactttcagctcctcggagacggcagcgagaatttccgcgtctttgcgcac
cacaagcggggccatgtgttgttgaagacttgtggggttctggaccgggaggaacgcgcc
gaatacgcgctgaggctcgggctgtgttgcggggaatgtgcggaaccctcgctggaagtt
gacgaggcgtctccggctgtggcggaggtggcgtccatcaaggtggacgtcttggatacc
aacgaccaccagcccaccttccccggggccggtgtgaagctgagcctggatgatgccact
gcgctccggacggcgatctacacggtcaccgcgcgggacggcgacagcggcaagaacgcg
gagctcatctacttcgctttgcccaggaacgggagtttctacgcggtgcccaaaaccgga
gacattctcctggtggactccatcctcggtcttggcgaaccgattaagtttgaagtgttt
gcccgggatcgcgggtggccgcctcgcacgagccagagcgtggcagtggaggtcagtccg
cggcagtggcccgtggcgccgagcgcacagccgggcaacgggaaacctaaaactccgatt
acagtggcagcgaggaggtccaggtcagtgctgggaccagaaagccccgttttaatcaac
gtgtccgaggacgcggcgatcgggtcggtggtgatgaaccttggcccggtgaggtttcag
tctgcggcgtttgagctggtggagcccggcgcggacagctcaccggtcagcgtgagtcgg
gacagcggagatatggtcatatcgaggcggctggaccgggagaccgagcctctgctggag
atcaccgtcaaagttcaggataaaagaggtccagagtggtacttggtgagagtggagttg
actgtgacggacgtcaacgataacatccccgaatgggtcatggttcccgctccctacctg
gccgtggtttcccctgacgccactgcgggcgctctggtctacaagctgcacgctgaggac
ggggatgaaggcaacaacggggaagtggagtacttcctgtctgacggcggcgacgggcgc
tttgaagtggacaggaagagcggccatgtgcagaccacgggcctccccctgcagcgcgac
agggagtacctgctgacggtggtggccgccgaccggctgggcagccgcagcgcccccgtc
gtcgtgtcggtggtggccggagctcggccgccacagttcaccaatgcctccttcaccatc
ggcataccggaaaacacacccgaaggacagcccttcctcgtcacacctgctgtgtccttc
cagaagaaactgatcagctacagcctcctcatcaatcccagcagcctcttctccatctca
gcagagaccggtgaaatcagcctgacccgccccatcgactacgagagcgaccagcatcgg
tacttgctgctggtgcgagccagcgagggcctggacagcatgagcagtgcagcggaggta
cgggtcgttatcgtcgatgaaaacgactgcgtcccagagttcctccagtccatttacagc
aaagacggcgtgccggagacagtgaccacagccacgtccctgctgcaagtgtccgccaat
gactgtgactccgaagagaacgcggagctgacctattacaccctgagtccggacttcacc
atctcccctcacgggaccatcttccctgcagggcctctggactacgaaagacccaaccac
ctgtacgagttcgtagtgatggccgttgacaagggggaggtcccccgcaccggaacaacc
acagtacggattcgaatggccaacgtcaacgacgaggcgcctgagttctcccagcatata
tatcggacctttgtctccgaggacgcgggacccaacacactcgttgccacggtgctggcg
aaggaccctgacggggacgggatcacgtatgtgatcaccacaggaaacgaagagggcaac
tttgtcattgacagccaaaaaggtttgatccgtctgcgctccagcccgccacctcacctt
cagggcgtggaatacgtcctcaatgtaacggcggaggacgacaacgcctcaggcggacct
caggctctgtcatctacagcccaggtcatagtgggggtggacgacgtcaataacaacaag
cctgtctttgagaagtgtcaacagtacagagagagcacgtcggtcctggagaaccagccg
gcagggaccttcgttctgcaggttcacgctgtggatgcggacgagggctccaatggcagg
gtcacatacggcttcatgcacaaagactccactgtgcctgcattcagtatccacccagac
accggagtaattgtgacagcaaggagatatgaccgtgaacgccaacgggagtacgccgtg
acggtgacggccactgaccaggcggtcgacccgctgatcggcatttgtcagctcaacgtc
ctcatcctggaccagaacgacaacagtcccaagtttgagaacatccgatacgagtacttc
cttcgcgaggacacgatgatcgggaccagtttcttgcgagtagcggctcacgatgacgac
tttggcaccaatgcagccgtcacgtactccatgtccagggagcagcctgagtatctgagg
gtcaaccccctgacaggctgggtgttcgtcaaccagcccatttcccagaggacctacatc
accagggacatcgtggccacagacggtgggaacatgagcagttcggtggagctgtccgtc
accatcaccaacgtaaagaaccagcctccccagtgggacaaagacagctacagcgtggtc
ataccagaaaacaccgtgcgagacaccgccatcgtgaacatcaaggccacttcgcctctc
ggggatcccagggtgacttacaacctggaggacggcatggtccctgagaccaacatgcca
gttcgcttctacttgacccccaaccgagaggacggctccgcctccatcctggtggcggag
cccctggactacgagaccaccaggaatttcatgctgcgggttcgagtgcagaatgtcgcc
gctgtgccgctggcggccttcaccacggtctacatcaacgtcacagatgtcaatgacaac
gtcccgtttttcacttcttccatttacgaggcctccgtcactgagggggcagaatcggga
actttggtgttccaggtttcggccaatgaccttgacttgggtctcaatggcaagatctcc
tactccctgctggaggatcgcagtggagaccaccagtacttccgtatcgacccggagctt
ggactcatctactcgcagacggtgtttgaccgtgagaccaagagctcgtacctgctggag
gttcagtccgtggacggctgggagtccgctcggcccggcaaacatggacagcccaactct
gacacggcatatgttcgcgtcttcatcagcgacgtgaacgacaacaagccggcgtttgca
caggtgtcttatgaagtagacgtggacgaggacgccgacgtaggcttcgccgttctcacc
gtcagtgccaacgacggggacgaaggtggaaacgctaagctgcgctaccagatcacatca
gggaacacgggaggggtgtttgatgtggagccagaggtgggcaccatctttatcgcccag
cctctggactacgaacagaacaagaggtacaagctcctcgtgctggcgtccgatgggaag
tgggaggattacacgacggtggcggtgaacgtgatgaacaagaacgacgaggcgccggtg
ttcaccgtgaacgagtactacggcagcgtgaccgaggagctggatggctctccggtgttt
gtgttacaggtaacggcgtctgacccggataaggatgccgaccaggaggccctgcgctac
tccctccatggccagggggcagaaagtgaattcataatcgatgaggtcacaggcaagatc
tacgcccagcggaccctggaccgcgaggagcgcgccgtgtggcgctttgtggtcttggcc
acagacgagggcggcgaaggtctgacgggcttcaccgacgtcatcattaatgtgtgggac
attaatgacaatgctccagtcttcacctgcgcccccagctgccacggtgacgtggccgag
aactccgcagcggggacgtccgtgatggagatgacagccactgacctggacgacgccgct
gtggggcagaacgccgtgctctcttacaggattatgggtagtttagacaccactagcatc
caggtgggagaggttcctaccttctcggaaatgttcaccatcaaccccaccacagggacc
atcaccgtggccatgggtggtctggacagggagcaggtcgagtcctacctcctggtggtg
gaggcccgagatgggggagggatgacggggacaggaaccgccaccgtacaaattaaagat
gtgaacgaccacgcgccaagattcacggagcgctcctgcctggcgaggatctctgagaat
gcagagaccaatgcagaggtccttgagctcactgcagaggacagcgacactggagaaaat
gcccagctgaccttcagtgttgtggctggagaccaagagcagaagttctacatggtcagt
cacaagcaggagcagcgcggcaccctgaggcttaagaaacgtctggactatgaacggcac
agcgagcaaaggttcaacctcacgctgaaggttgaggacatggacttctccagcctcctg
cactgtgcggtggaggtggaggactctaacgaccacgctcctgtcttcattccgcacctc
ctggctctcgccccgctacccgaggacatcgacgttggaaccagtgtggcgcgcctggtg
gccagtgactctgattcaggccagaaccgtgacatgacctacagcttatctgaggactcg
gatcccgatgggctgttcaccatcgaccagtccggcgtactctccgtggcacggcttctg
gatcgggagaggatatcgcagcatcacctggttgtcatagcaactgatcacggggtgcca
cctctgacgggcagcgccacagtccagctgccgctgttggatgtaaacgataacggaccc
gagtttgaggcagcgtactccccagtcgtctttgagaatgcagccggaccacaggtcgta
cagttgaaccaaacgtcgaccctcctccatgctgtggaccgggactccccagagaacgga
cccccccttcacttcaccgtcccctccgagtatcgccacagcaacgacttctacctccag
gacaacctgaatggcacggcgacgctcacagctttgaggacatttgatcgcgagcggcag
aaagagttcctccttcccattattatgagcgacagcggccatccggccaaaacagtgacc
accaccttaacggtgaccatcggcgaccaaaacgaccacgcgcatgtggccggggagaag
aagattttcatcaatagtcacagaggccggatgccgactacagtgcttgggaaggtctac
tctcctgaccctgatgactgggacaacaagacgtacgtctttgaaggacacatcccgagc
tactttatcctgaacaagcgaaccggcttcctgatcatcaaagagaacaccccacccgac
gtctatcacttccaggtgcgcgtgtcggatggagtgtggccagatgccgtctcctcggtc
accgtgcacgtgagggagctgcgtgacgatgccatctacaactcggggtctctccgccta
gcagacatcacagcgagggagttcattgaactgagaggaaagcagcggagccgctacgag
ctgctgctggacttcctgtccgagatgctctccgttccacccgacgatgtcaacatcttc
agcctcatggatgtgaaggagcgaatgctggacgtccgcttcgccgtgcgcggtgggccc
tccttcctccaacccgagaagatccacggttatgtggccgcccacaaacaaaaactgcag
tccttcctgcaggtcaacgtcttccaggtgcgggtggacgagtgcccgggctcggagtgt
gccggagccgggggctgcaccagcgctctgaacgtgagggacacgcccacggtggtggat
tgcggcaccatgagtctcgtctcggtgacggtggagtccacagccgcgtgcctctgccct
gggagggagcagtcccatcagccctgcacctcgtatcccagaaacccctgcttcaacggt
ggcgtgtgtgtggacacgcagcacggctacaggtgccaatgcccatctcagttcgaagga
cccgagtgccagcagaacaaacacagtttccatggcaacggctatgcctggtttcctccc
gtgatgccttgctttgagagccacgtgtcgctggagttcatcacggaggttgccgacggc
ctgctgctgtacaacggccccttggcccagctgcaggcctgggaccacgaggacttcatg
gccatagagctaatagatgggacccccaccttgaaaatcaaccacggctccggcacagta
gtgctgcagttgccaggcaacgtgaacgtggcagacagacggtggcatcggctggacgtc
cgcagcaacagcaaggaagtgcgtttcaccctggatcgctgctcgggggcggcggtgatg
gagatggaaggcctcggcagctgggtgaccacagaggaccactcctcctgtgaagtgaca
ggagttacacccaacgccgaccgacacctgaacatgagccaggtgctccagctgggcggt
gtcaacgaggacattccctacatctaccctcagcttcagcacaaacacttcaccggctgc
atccgcaacctcatcgtggacagcaagctctatgatttgggctccccggccgactcgcaa
tccagctcttcaggctgcctgacgaccgacagcagctgcgtcaacatgggctacccgtcc
tgtggccaccggggtcgctgtcacggagagtggggctccttcagctgccagtgtgtcccg
ggatacgcaggacaccattgtgaagaggaggccccagagtatacatttgatggccacagc
cacgtgcactaccagctggcatccccgctgtcggcccggaggacctgggttcaggtcctg
gttcggacccgcaaacacagcagcaccatcctgaatctaagctccaaggagctgagtgaa
tacatacgactagagatcttccagggcctcctttgcgttttctacaacctcggggacggg
gatttcaacttgactctacccacctatcgcctcgacaacggcgattggcacgaggtgttc
ctcgaccggcatgacaatgagatgacgctgcgactggacggcggcgggggacagcgggag
gtcaagggatcgcggggccgaagccgggaaatcatcatcgaccccactgtggtgatgcta
gggaacaccttcccctctggaatcaacaagagcttccagggttgcatgagggacgcacgc
ctcaacggccgctatttgcctctggacagccagacgcgtgatggggtttcccaggtcagc
attcaaggcctctcccctgggtgctcgtctgactcctgcaagaggaaccagtgtagcgcc
cccttcacctgtgttgacttgtggagagtgcacgaatgcagatgtcctcctggccacatg
atccgtgtgaacgggaccagaaagtcctgcgtctacacgctctgtgccactcggccttgt
caccggggcacctgtgtggcacagtcaccctccaaattcacctgccactgccccgagggt
taccgaggacgccactgcgagacgccactggccatctatcgggaggacgtgggtctgagt
ttcagctccctgtttgccatctgtatctgcttcatggccttactagtgctgctgctgggc
atcttctcctacacccgctggaggagctacaaagggctgaaggagggcgtttaccacgtc
tcagcccaccacgacggctgggaggacatccgagagaacgtcctcaactatgacgaggag
ggcggcggcgaggaggaccagaatgcctacgacatggcggagctgcagaaatccctccag
ccgagcccggcccagtcggtccagtactgccgctccagagccctccaccaccctcccccg
cccctccaccaccaccacctcctccaccaggcgccgccggccccgtctgccgcccaggcg
ctggacctcctcagccggacgtccagctccactaccctgcccccctcggcagcctccacc
acctccactgccaccaccggcaccaacggcagcctgcgcagggacgtgccccccacccgg
ctgccggcccaggcccaggcacgctccaccaagctggcgcggcgctcgctgtccttctcc
agccaggacctggcgcgctacctgtgcgagatcatccgcgacgccgaccagcaccgggac
acggggcctttcgactccctgcaggtgttctccacggagggagggggctcgcccgccggc
tccctcagctccttcagctcggcgggcttggacgggaacaggggaggggaaggcgtggaa
gaggggaggagggaggagacactcggggagtgggggccccgctttgagaagctgcgggcg
ctgtacgagcgggcggaggccagcgacctctga
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integrated database retrieval system
