Gasterosteus aculeatus (three-spined stickleback): 120807738
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Entry
120807738 CDS
T07457
Symbol
ddb1
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03420
Nucleotide excision repair
gat04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120807738 (ddb1)
09124 Replication and repair
03420 Nucleotide excision repair
120807738 (ddb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gat04121
]
120807738 (ddb1)
03400 DNA repair and recombination proteins [BR:
gat03400
]
120807738 (ddb1)
Ubiquitin system [BR:
gat04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
120807738 (ddb1)
DNA repair and recombination proteins [BR:
gat03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
120807738 (ddb1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
120807738 (ddb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
120807738
NCBI-ProteinID:
XP_040015992
UniProt:
A0AAQ4QRT2
LinkDB
All DBs
Position
II:21665047..21694114
Genome browser
AA seq
1139 aa
AA seq
DB search
MSYNYVVTAQKPTAVNACVTGHFTSADDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTSKYNACILEYKQTGESIDIITRAHGNVQDRIGRPSETGI
IGIVDPECRMIGLRLYDGLFKVIPLDRDNRELKAFNIRLEELQVIDVHFLYGCQAPTVCF
IYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYH
NGDKYLAIAPPTIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEELMDGTVALKDL
HVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNDLGSYVGVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSEAGKE
TDDMLVLSFVGQTRVLMLSGEEVEETELPGFVDNQQTFYCGNVAHQQLIQITSGSVRLVL
QESKALVSQWKEPQGRNISVAACNHTQVVLAVGRALYYLQILAGELKQIGTTEMEHEVAC
LDITPLGEGGGESPLCAVGLWTDISARVLKLPCFTALHKEMLGGEIIPRSILMTTFEGSY
YLLCALGDGALFYFGLDLQTGALSERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRRICYQEVSQCFGVLSSRVEIQDVSGTTSAVRPSASTQALSSSVSSSKLFPSSTSPHET
SFGEEVEVHSLLVVDQHTFEVLHAHQFLPSEYALSMVSCRLGKDPSVYFIVGTAMVYPEE
AEPKQGRIIVFHYTDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGVFHLGEFVNVFCHGSLVLQNLGES
STPTQGSVLFGTVNGMIGLVTSLSEGWYSLLLDLQNRLNKVIKSVGKIKHSLYPSGTLRT
KEPATRFIDGDLIESFLDLGRAKMQEVVSTLQIDDGSGMKREATVDEVIKIVEELTRIH
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacaactacgtggtaacagcccagaagccgacggcggtgaacgcctgcgtcaca
ggtcacttcacctccgccgacgacctcaacctgctcatagccaagaacacccggctggag
atctacgtggtgacggcggagggactgcggcccgtcaaggaggtcggcatgtacgggaag
atcgcggtcatggagctcttcaggccgaagggcgagagcaaagacctgctgttcattctc
acatccaagtacaacgcctgcatccttgaatacaaacagaccggggagagcatcgacatc
atcactcgtgcccacgggaacgtccaggatcgtatcgggcgcccgtcagaaacgggtatt
atcggcatcgtggacccagaatgccgcatgatcggactgcggctgtacgacgggttgttc
aaggtgatccctctggaccgggacaaccgcgagctcaaggccttcaacatccgcttggag
gagctgcaggtcatcgacgtgcacttcctgtacggctgccaggccccgacggtctgcttc
atctaccaggacccccagggacggcatgtgaagacctacgaggtttctctgagggagaag
gagttcaacaagggcccctggaaacaggagaacgtggaggccgaggcctccatggtgatc
ccagtgccggagccatttggtggcgctatcatcataggccaggagtccatcacctaccac
aacggagacaaatacttggccatcgcaccacctaccatcaagcaaagcaccatcgtctgt
cacaaccgggtggatcccaacggctctcgctacctgctgggggacatggagggacgcctg
ttcatgctcctgctggagaaggaggagctgatggacggcacggtggcgctcaaagacctc
cacgtggagctgctgggcgagacgtccatcgccgagtgtttgacctacttggataacgga
gtggtgtttgtgggctccagactgggagactcccagctggtgaagctcaacgtggacagc
aacgacctgggctcctacgtgggggtgatggagaccttcaccaacctggggcccatcgtg
gacatgtgtgtggtggacctggagaggcagggacagggacagctggtgacgtgctccggg
gcgttcaaggagggctcccttcggatcatccgcaacggcatcgggattcacgagcacgcc
agcatcgacctgccgggaatcaaaggtttgtggcctctgcgctccgaggccggcaaggag
acggacgacatgctggtgctgtcctttgtgggtcaaacacgagtgttgatgctgagtggc
gaggaagtggaggagactgagcttcccggcttcgtggacaaccagcagacgttttactgt
ggcaacgtggcgcaccagcaactcattcagatcacgtcgggctccgtgcgcctggtgctc
caggagagcaaggcactggtgagccagtggaaggagccgcagggcaggaacatcagcgtg
gccgcctgcaaccacacgcaggtggtgctggccgtgggacgggccctctactacctgcag
atcctggcgggagagctgaagcagatcggcaccacggagatggagcacgaggtggcgtgt
ctggacatcactcccctgggggagggcggcggcgagtctcccctctgcgccgtgggactc
tggaccgacatctcggcccgtgtgctcaagctgccttgcttcactgccctgcacaaggag
atgctgggcggagagatcatccctcgctccatcctaatgaccacctttgaaggcagctac
tacctgctgtgcgcgctgggagacggcgccctcttctatttcggtctggacctgcagact
ggcgccctgagcgagcgtaagaaggtcaccctcggcacgcagcccaccgtgctgcgcacc
ttcaggtccctctccacctccaacgtcttcgcctgctccgaccgacccaccgtcatctac
tcctccaaccacaagctggtcttctccaacgtcaacctcaaggaggtcaactacatgtgc
cccctcaactccgagggctaccccgacagtctggcgttggccaacaacagcacgctgacc
atcggcaccatcgacgagatccagaaactccacattcgcactgtcccgctctacgagtcc
cccaggcggatctgttaccaggaggtttcccagtgtttcggggttctatccagccgggtg
gagatccaggatgtgagcggcaccacatctgccgtgcgccccagcgccagcactcaggcg
ctctccagcagcgtgagctccagcaagctcttccccagcagcacttctccccacgagacg
tccttcggcgaggaggtcgaggttcacagtctgctggtggtggaccagcacacctttgaa
gtcctccacgcccatcagttcctccccagcgagtacgccctcagcatggtgtcgtgtcgc
ctgggaaaagacccatcagtgtacttcatcgtcggcaccgccatggtgtacccggaggag
gcggagcctaagcagggacgcatcatcgtcttccactacaccgacgggaagctgcagacg
gtggctgagaaggaggtgaaaggagccgtctattccatggtggaattcaatggcaaactg
ctcgccagcatcaatagcacagtgcgcctctacgagtggacggcggagaaggagctgagg
accgagtgcaaccactacaacaacatcatggccctctacctgaagaccaagggggacttc
atcctggtgggggacctgatgcggtccgtcctgctgctggcctacaagcccatggaaggc
aactttgaggagatcgcgcgtgactttaatcctaactggatgagcgccgtggagatcctg
gacgacgacaacttcctgggggcggagaacgccttcaatctgttcgtctgccagaaggac
agtgcggccactacggacgaggagcggcagcacctgcaggaggtgggggtcttccacctc
ggggagttcgtaaacgtcttctgtcacggctcgctggtgctgcagaacctgggggagagc
tccacgcccacccagggctccgtgctcttcggcaccgttaacggcatgattggtctggtg
acgtcgctgtccgagggctggtacagcctcctcctggacctgcagaaccgcctcaacaag
gtcatcaagagcgtgggcaagataaagcacagcttatatccttctgggacgttgcgaaca
aaggaacctgccacgaggttcatcgacggggatctgatcgagagcttcctggacctcggc
cgggccaagatgcaggaggtcgtcagcactttacagatcgacgacggcagcggcatgaag
cgcgaggccaccgtggacgaggtcatcaagatcgtggaggagctgacgaggatccactag
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integrated database retrieval system
