Gasterosteus aculeatus (three-spined stickleback): 120807862
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Entry
120807862 CDS
T07457
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gat03041
]
120807862 (ddx1)
03016 Transfer RNA biogenesis [BR:
gat03016
]
120807862 (ddx1)
Enzymes [BR:
gat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120807862 (ddx1)
Spliceosome [BR:
gat03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
120807862 (ddx1)
Transfer RNA biogenesis [BR:
gat03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
120807862 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
SPRY
Helicase_C
ResIII
CMS1
DUF5766
Motif
Other DBs
NCBI-GeneID:
120807862
NCBI-ProteinID:
XP_040016218
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All DBs
Position
XVIII:11407268..11413356
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AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEELGWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFTIPV
IQIVYETLKDEQEGKRGRSSIKTGGAIFNNWQMNPYDRSAAFAIGPDGLCCQSREFKEWH
GCRSTKGVSKGKYYYEVTCHDQGLCRIGWSTSQAALDLGTDKYGFGFGGTGKKSNNKQFD
SYGEEFTMHDTIGCYLDLDKGQISFSKNGNDLGTAFEIPQNVQSQPFFASCVLKNAELKF
NFGSEDFKNAPKSGFVALVQAPEGHAVKSPQAGSAKVSQAKASSNAPRALILEPSKELAE
QTLNNVKQCGKYVDNPKLRNLLVIGGVPAKDQMAALEHGVDIVVGTPGRLDDLISTGKLS
LSQVRFLVLDECDGLLSAGYTDFLNRIHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
RIMHFPTWVDLKGEDSVPESVHHVVVPVNPKNDRLWERLAKNHIRTDEVHAKDNTRPGAN
SAEMWSEAIKMLKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDSKNHQL
SCVCLHGDRKPIERKTNLERFKKKEVRLLVCTDVAARGIDVHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAMEKEKVWYHACPNRGRGCYNTRLKEDGGCTIWYNEKELLS
DIEEHLKCTITQCEPDIKVPLDDFDGKVTYGQRKKLGGGNYKGHVDVLAPTVQELAILER
EAQSSFLHLGYMPNQLFRAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgttctctgaaatgggggttatgcccgaaatcgcgcaggctgtggaagagctg
ggctggctgctacctactgacatccaggccgagtccattccccttattcttggtggagga
gatgtacttatggcagctgaaactgggagcggtaaaaccggcgccttcactatccctgtg
atccagattgtgtatgagaccctgaaggatgagcaagagggcaagaggggcagatcctcc
atcaagactggaggagctattttcaacaactggcagatgaatccttatgaccgcagcgct
gcctttgcgattggtccagatggtctgtgctgccagagcagggagtttaaagagtggcat
ggctgtcgctctacaaaaggggtctccaaagggaagtactactatgaggtgacttgccat
gatcagggtctgtgtcgcatcggctggtccaccagtcaggcagctctggacttgggaacc
gataagtatggttttggttttggggggactggaaagaaatccaacaacaagcagtttgac
agctatggagaggagtttaccatgcacgacactattggatgctacttggacctagacaag
ggacagatttccttctctaaaaacggcaacgacctgggtacggcttttgagatccctcaa
aatgtgcagagtcagcccttctttgcctcctgtgtgctcaagaatgcagagctgaagttt
aactttggaagtgaagactttaaaaatgcccctaagagtgggtttgttgccttggtacag
gcgccagagggccatgcagtcaaatctcctcaagcaggcagtgccaaagtgagtcaggcg
aaggcatcgtcgaacgcgcctagagcactgatcctggagccatcgaaagaactggccgaa
caaaccctcaacaatgtcaagcagtgtgggaaatatgtagataatcccaaactcaggaac
ctcctggtgattggtggcgtccctgccaaagatcagatggctgctctggaacacggggtt
gacattgtggtgggaacgcctggaagactagacgaccttatatcaactgggaagctcagt
ctctcccaagtccgctttctagtcctggatgagtgtgacggcttactgtccgcaggctac
acagactttctcaacaggatccataaccaaatccctcaagtcacttctgacggtaaaaga
ttgcaggtgatcgtctgttcagccacgctgcattcgtttgacgtaaagaagctgtctgag
cgcatcatgcactttcccacgtgggtggacctgaagggcgaggactccgtccccgagagc
gtccaccacgtggtagtgcctgtaaatccgaagaacgaccgcctctgggagcgcctcgcc
aagaaccacatccggactgatgaagtccatgccaaagataacaccagaccaggagccaac
tctgcagaaatgtggtcggaagccatcaagatgctaaagggcgagtacactgttagggcc
atcaaagagcacaagatggaccaggccatcatcttctgccgcaccaagatcgactgtgac
aacatggagcagtacttcattcagcaagggggaggtccagacagtaaaaaccaccagctc
tcctgtgtctgtctccatggtgatcgaaagccaattgagagaaagactaacttggagcga
ttcaagaaaaaagaagtgaggctcttggtctgcacagacgtagctgccagaggaattgac
gttcacggagttccttatgtgataaacgtcaccctgccagatgagaagcagaactacgtc
catcgtattggaagagttggaagagcggagaggatgggactggccatctccttggtcgct
atggagaaggagaaggtgtggtaccacgcttgcccaaaccgaggcagaggctgctacaac
actcggctgaaggaggacggaggttgcaccatctggtacaacgagaaagagctcctgtca
gatattgaggagcatctgaaatgcaccatcacccagtgtgagccagacatcaaagtgccc
ctggatgattttgatggaaaggtcacctatggtcagcgcaagaagttgggaggtggtaac
tacaaaggtcacgtggacgttctggccccgacggtccaggagctggcaatcctcgagaga
gaagctcagtcatccttcctccacctgggttacatgccgaaccagcttttcagagccttc
tga
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