Gasterosteus aculeatus (three-spined stickleback): 120808135
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Entry
120808135 CDS
T07457
Symbol
trim54
Name
(RefSeq) tripartite motif-containing protein 54
KO
K10653
tripartite motif-containing protein 54
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
120808135 (trim54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gat04121
]
120808135 (trim54)
Ubiquitin system [BR:
gat04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
120808135 (trim54)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-B_box
zf-C3HC4_4
zf-RING_2
RING_XB3-XBAT31
zf-C3HC4_3
zf-RING_6
zf-RING_5
Sina_RING
Prok-RING_4
LRIM1_dimer
Motif
Other DBs
NCBI-GeneID:
120808135
NCBI-ProteinID:
XP_040016723
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All DBs
Position
XVIII:3283355..3293664
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AA seq
353 aa
AA seq
DB search
MNFALRPPSSGRSGPGGGRGATMENLEKQLLCPVCLEVFSKPVVILPCQHNLCRKCASDI
FQAADPLWRSRGSSSTGSSGARFRCPSCLHEVVLDRHGVYGLQRNLLVENILDMFRQQES
SRPVNIKPEQKLLCEEHEEEKINIYCLSCETPTCSMCKVFGKHKDCDVAPLSSVYARQKA
DLSDSIATLVASNDHVQAAITQMEEMCRTVEENGRRRREQLAGRLDGLAAILDERKRELV
GLIATERDGKLGRVRGLVGRYSDRLEAAVALVESAIRSNEETRAPLFIQSANVILEKIAV
AARSSHAERPELHEDVSHFVIDTDDLADMLRNIRFPPGDGDEDPDECGEDSDL
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcgccctcaggcctccatcctcaggcagatccgggcccggtggcggcagagga
gccaccatggagaacctggagaagcagctgctctgcccggtctgcttggaggtgttctcc
aagcccgtggtcatcctgccctgccagcacaacctctgccgcaagtgtgccagcgacatc
ttccaggcagccgaccctctgtggcgttcccgcggctcctccagcacgggctccagcggc
gctcgcttccgctgcccctcgtgcctgcacgaggtggtgctggatcgccacggggtctac
ggcctgcagaggaacctgctggtggagaacatcctggacatgttcagacagcaggagtcc
tccaggcctgtgaacataaagccagagcagaagctgctgtgtgaagaacacgaagaggag
aagatcaacatctactgcctgtcctgtgagacgccgacctgctccatgtgcaaagtgttt
ggaaagcacaaagactgtgacgtggcgccgctcagcagcgtttacgcgagacagaaggcc
gacttgagcgacagcatcgcgacgctggtcgccagtaacgaccacgttcaggccgccatc
actcagatggaagaaatgtgccgcactgtcgaggagaacggccggcggcggagggaacag
ctggccggccgccttgacggcctggcggccatcttggacgagcggaagcgggagttggtg
gggctcatcgccacggagcgggacggtaaactcgggcgcgttcggggtctcgtcggccgc
tacagcgatcggctggaggccgcggtggcgctggtggagtcggccattcggtccaacgaa
gagacacgcgcgccgctgttcatacagagcgccaacgtcatactggaaaagatagcagtg
gcagcgagatcgtcccacgcggagcgtcccgagctccacgaggacgtgagccactttgtc
atcgacaccgacgacctcgccgacatgctgagaaacatccgcttcccaccaggtgacgga
gatgaagatcccgatgaatgcggagaagactcagacctctaa
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