Gasterosteus aculeatus (three-spined stickleback): 120808296
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Entry
120808296 CDS
T07457
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120808296
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gat03021
]
120808296
03036 Chromosome and associated proteins [BR:
gat03036
]
120808296
Transcription machinery [BR:
gat03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
120808296
Coactivators
SAGA/TFTC/STAGA complex
120808296
Chromosome and associated proteins [BR:
gat03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
120808296
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
SseC
TAF
Motif
Other DBs
NCBI-GeneID:
120808296
NCBI-ProteinID:
XP_040017072
LinkDB
All DBs
Position
2:4268159..4332564
Genome browser
AA seq
940 aa
AA seq
DB search
MAGASDPLEEMLFSEVDEKAVSDLVGSLESQLAGQSSLAGKTDENGGAGSVAPANHHLGK
TLPAPVGTTTLEQQQQGRRNKPEVPLEINSKDASPDAAAESPSPDSTRHPGEPPAASAAR
AGATSTSGSRSHGASITTPTASGASSLASAPDSISAASARGSKMSPGSCGSSPEESDPPR
KRIGAPRRSASTRAKSLNGAAVATRRSSGTAAEDASPAETGDPATPNSTRPATTSSINAS
TFTLSKADLPAGQSAIALDRGTPTIALRRLPSHIVASIAQTGSGTSVSALAQQGARAGPA
ASPSASQGNHSADDCQAKTAPPGQLGGVNSAISAVSAVVTTTAATTAAAAAAAAAPAAPP
AAVTRPAAGVTGQVTSVATAVSMVRPSLPSPTPAAQVQPRPGLAAPQRIAAPQVIVRPPQ
QPTTIQLPPGFTIPPGMVLVRTELGQLVMVPQQALAQAQAQAQAQAQAQAQAQNSISPRP
ATPTTRASFRVTTPQKVPAAPAVAVPATQQTPAVAVAPQAPGPDAKIEPEEFTSRLQTEL
KSSPQPYLVPFLKKSLPALRLSLMNSQQSPTPSQQQGVKPPPCGAPPALAPAVRARHPNS
VSITPPPGTPGHAAGVGIKAAGAGGGHVRMPVVITQSVRTQGTMGKGGFIQAGKSPVGPA
AAQICGNQRNKLNDPGGGSFRDDDDINDVASMAGVNLNEESARILATNSELVGTHIRSCK
DEAFLHPGLLHRRILETARKFGVTEVPVEAVTFISHAAQARLRTVVEKVSTIAQHRLDSF
KDDECYEQSADARSQLRFFEQLERMEKQRKDEQEREILLKAAKSRSRQEDPEQARLKQKA
KEMQQQELAQMRQRDANLTALAAIGPRKKRKVDSPGTTPPGAEVPGSAAGSPASSSSPST
SSRQYARNRITRVNLRDLIFYMEQERETAHSLLLYRALLK
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgcctccgaccccctggaagagatgctgttttcagaggtggacgaaaaagct
gtgagcgacctggtgggctcactggagtcacagctcgccggccaaagcagcctggcgggc
aaaacagacgaaaacggaggcgcgggctcggtggcccctgctaaccatcacttgggaaaa
acgctaccagctccagtgggcacaacaacactagaacaacaacaacaaggacggcgaaat
aaacccgaggtccccctggagatcaactcaaaggacgccagcccggacgccgctgccgag
tccccttctccggactctacccgtcatcccggcgagccgcccgccgcctccgctgcccgc
gcgggagccactagcaccagcggctcgcggtcacatggagcatccatcacaacaccgacg
gcgtccggcgcgtcaagtttggcgtccgcgccggacagcatcagcgccgcgtccgcgcgg
gggtccaagatgagccctgggtcgtgcgggtcctcgccggaggaatccgacccgccgagg
aaacgcataggcgcgccgcggaggagcgcgtcaactcgggcgaagagtttgaacggcgcg
gctgtggcgaccaggaggagcagcggcaccgcggcggaggacgcgagccccgcggagacc
ggagacccggccacgccgaactccactcggccggcgaccacgtcctccatcaacgcgtcg
acgttcaccctctccaaggctgacctgcccgcgggccagtcggcgatcgctctggaccgg
gggactcccaccatcgcgctgcgcagactccccagccacatcgtggccagcatagcccag
accggcagcgggaccagcgtgtcggccttggcccagcagggcgcccgcgcaggacccgcc
gcctccccgtcggcttcgcaggggaaccacagcgccgacgactgtcaggccaagactgcg
ccgccgggccagcttggtggtgtcaactccgcaataagcgccgtctccgctgttgtcacg
acaaccgccgccacaacagcagcagcagcagcagcagcggccgcaccggccgcaccgccc
gcggcggtgacccggcccgccgcgggcgtcacgggtcaggtcacgtcggtggccaccgct
gtgagcatggtccggcccagtctgccctcaccgacccccgccgcgcaggttcagccccgt
ccgggactggcggcacctcagaggatcgcggccccgcaggtgatcgtccgaccgccgcag
cagccgacgaccattcagctgccccccgggttcaccatcccaccggggatggtgctggtg
cgcacggagctgggccagctggtgatggttcctcagcaggctttggctcaggctcaggct
caggctcaagctcaagctcaggctcaggctcaggctcagaacagcatctccccacgacct
gccacccccacaacaagagcctccttcagagtaacgactcctcagaaggtccccgcggcg
ccggccgtggcggtgccggctacgcagcagacccccgcggtggcggtggccccccaagcc
ccgggaccggatgccaagattgagccggaggagttcaccagccggctgcagactgagctc
aagtcgtcgccgcagccgtacctggtgccctttctcaagaagagcctgccggccctgagg
ctgtccctgatgaacagtcagcagtccccgaccccgtcccagcagcagggagtcaaaccg
ccgccctgcggggcccctcccgccctcgcgccagctgtccgcgcgcgccaccccaacagc
gtcagcatcacgccgccccccgggacgccgggacatgcagccggcgtgggtatcaaggca
gcaggcgccggcgggggccacgtccggatgcccgtggtgatcacgcagtccgtcagaaca
caaggcacaatggggaagggaggcttcatccaagcgggcaaaagtcccgtgggccccgct
gccgctcagatctgtgggaatcagaggaacaagctcaacgaccccggaggaggttctttc
agagacgatgacgacatcaacgatgtggcctccatggccggggtgaacctgaacgaggag
agcgccagaatactcgccaccaactcggagctggtgggaacgcacatccgctcgtgcaaa
gacgaggccttcctccacccgggcctgctccatcggcggattctggaaacggccaggaag
ttcggagtcactgaggtcccagtggaggccgtgacgttcatctctcacgccgcacaagct
cgccttcgaaccgtagtggaaaaggtttcaaccatcgcacagcaccgactggactccttc
aaggacgacgagtgctacgagcagtcggcggacgctcgctcgcagctgcgcttcttcgag
cagctggagcgaatggagaagcagaggaaggacgagcaggagcgggagatcctgttgaaa
gcagcgaagagtcgctccaggcaagaggacccagagcaagctcgactgaaacagaaagcc
aaggagatgcagcaacaggaactggcgcagatgaggcagcgagacgccaacctcaccgca
ctggctgccattggcccccgcaagaagcgcaaagtggattcgccggggacgaccccaccg
ggggccgaggttccaggcagcgcggcgggctccccggccagctcctccagcccgtccacc
tcatcgcggcagtacgcgcgcaaccgcatcacccgcgtcaacctcagggacttaattttc
tacatggagcaagagagagagacggcccactccctcctgctctaccgcgccctgctcaag
tag
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