Gasterosteus aculeatus (three-spined stickleback): 120808533
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Entry
120808533 CDS
T07457
Symbol
hmbox1b
Name
(RefSeq) homeobox-containing protein 1 isoform X1
KO
K24885
homeobox-containing protein 1
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gat03000
]
120808533 (hmbox1b)
Transcription factors [BR:
gat03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
120808533 (hmbox1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HNF-1_N
Homeodomain
Homeobox_KN
HTH_3
AbiJ_NTD3
HTH_37
HTH_24
HTH_31
DUF494
Motif
Other DBs
NCBI-GeneID:
120808533
NCBI-ProteinID:
XP_040017445
LinkDB
All DBs
Position
XVIII:1023441..1032144
Genome browser
AA seq
501 aa
AA seq
DB search
MSEFSEEPRFTIEQIDLLQRLRRSGMSKPEILHALDTLDRLDREHGDKFGRRTSSSSSSS
SCYGVGGANGCANSSASNANNSNAALAAPAASSSSAACNGGEGAAGDRSAAATSSTTPKI
STSTQTQFGREGGLSPSPSNSYDTSPPPGPPPPSAALSSPVSLVALSQNGRDSLAATPNG
KLSPPRYPVNSAAAARAFGFEAAEEDLDIDDKVEELMRRDSSLVKEEIKAFLGNRRISQA
VVAQVTGISQSRISHWLLQHGSDLSEQKKRAFYRWYTLEKTTPGATLNMRPAPLPLEEME
WRQTPPPVTTAPGTFRLRRGSRFTWRKECLAVMESYFNDNQYPDEAKREEIANACNAVIQ
KPGKKLSDLERVTSLKVYNWFANRRKEIKRRANIEATILESHGIDVQSPGGHSNSDDIDG
NDFSEQACDLPYFDKRPLSRPFGLYRLEPTSPTQDDSAAHSEHQDPISLAVEMAAVNHTI
LALSRTGGVPNDIKTESLEDE
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagttcagcgaggagccgcgcttcaccatcgagcagatcgatctgctgcagcgg
ctccggcgcagcggcatgagcaagccggagatcctgcacgcgctcgacacgctggaccgg
ctggaccgggagcacggcgacaagttcggccgccgcacctcctcctcctcctcttcctcg
tcctgctatggagtaggcggagcgaacggttgcgccaacagctccgcctccaacgccaac
aacagcaacgctgccttggcggcgcccgccgcctccagctcctccgcggcgtgcaacgga
ggcgagggcgctgccggcgatcgctcggcggcagccacgtcctccaccacgcccaaaatc
tccacctccacacagacgcagttcggtcgggaaggcgggctctcgccgtcgcccagcaac
agttacgacacctccccgcctccaggcccgccgccgccgtccgccgccctgtcctccccg
gtgtcgctggtggccctgtcgcagaacggtcgggacagcctggccgccacgcccaacggg
aagctgtctccgcccaggtacccggtgaacagcgcggcggcagcgcgggcgttcgggttc
gaggccgcggaggaggacctggacatcgacgacaaggtggaggagctgatgaggagggac
agcagcctggtgaaggaggagatcaaggcgttcctggggaacaggaggatctctcaggcc
gtggtggcacaagtcaccggcattagccagagccgcatctcccactggctgctgcagcac
ggctccgacctgagcgagcagaagaagagggccttctaccgctggtacacgctggagaag
accacgccaggtgccactctgaacatgcggccggctccgttgcctctggaggaaatggag
tggaggcagacgccgccccccgtcaccaccgcgcccgggaccttccggctgcgtcgcgga
agtcgcttcacgtggaggaaagagtgtctggcagtgatggagagctacttcaacgacaac
cagtacccagacgaggccaaacgggaggagatcgccaacgcctgcaacgccgtcatccag
aagccagggaagaagctgtcggatctggagcgcgtgacgtccctgaaggtttacaactgg
ttcgccaaccgccgcaaagagatcaagagacgcgccaacattgaagccacaatcctggag
agtcacgggatcgacgtgcagagtcccgggggacactccaacagcgacgacatcgacggg
aacgacttctcagagcaggcatgcgacctgccctactttgacaagaggcctctcagtcga
ccttttggcctctaccgcctggagcccacctcgcccacccaggacgacagcgcggcgcac
agcgagcaccaggaccccatctctctggcagtggagatggccgccgtcaaccacaccatc
ctggccctgtccaggaccgggggggtccccaacgacatcaagaccgagtccctggaagac
gaatga
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