Gasterosteus aculeatus (three-spined stickleback): 120808818
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Entry
120808818 CDS
T07457
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2 isoform X1
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gat03009
]
120808818 (ighmbp2)
03012 Translation factors [BR:
gat03012
]
120808818 (ighmbp2)
Enzymes [BR:
gat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
120808818 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
120808818 (ighmbp2)
Ribosome biogenesis [BR:
gat03009
]
Eukaryotic type
Other ribosome biogenesis factors
120808818 (ighmbp2)
Translation factors [BR:
gat03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
120808818 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
ResIII
DEAD
Viral_helicase1
nSTAND3
Helicase_RecD
IstB_IS21
UvrD-helicase
AAA_16
AAA_22
SLFN-g3_helicase
ABC_tran
Flavi_DEAD
PhoH
AAA_25
SRP54
NPHP3_N
AAA
ATPase
Zot
AAA_28
AAA_31
MeaB
UvrD_C_2
NTPase_1
ATPase_2
Motif
Other DBs
NCBI-GeneID:
120808818
NCBI-ProteinID:
XP_040017949
UniProt:
G3NNX4
LinkDB
All DBs
Position
XIX:17532431..17538742
Genome browser
AA seq
1014 aa
AA seq
DB search
MAVEKFVSKTLELLQEEREAEIEETRIWQENISLKDLQNKGVCLLKLQVGSQSTGLYGRT
VIILEPRKHLGFSSLPSNSFGPGDIVGLYDTGGCTPASQVGTGIVTRVSQASISVAFDDS
KDGLRFDTDALHNLLKLANDVTYKRMKNALNTLNGYSHGPAANLINVLFGDTKPSHQSQT
NEVKFFNSNLDDSQREAVSFTLSQREVAVIHGPPGTGKTTTVVEIILQAVKQGQKVLCCA
PSNVAVDNLVERLARCKAKVLRLGHPARLLESIQKHSLDAILAQSDNAGIIADIRKDIDK
AFIGMKKMREKGERVNFKREIGELRKELKSREATAMAQILKRADVVLSTNTGASRDGPLK
LLPEEHFDWVVIDECAQALESSCWIGLLRARKCVLAGDYKQLPPTIKSQKAASNGLSLSL
MERLIQMYGDSVVRMLTVQYRMNSAIMSWASKEMYQGRLTAHSSVERHLLKDLPGVSCVE
ETSTPLLLIDTAGCGLSEMEVTDEQSKGNPGEVDIVELHIKALTGAGVKAKDIAVIAPYN
LQVDLLRQKLSARHPELEIKSVDGFQGREKEAVVLSLVRSNRKGEVGFLAEDRRINVAVT
RARRHVAVVCDSQTVQSHAFLKSLVVHMTQCGEVRTAFEYIQDVVPQNYTRDHKDTKANA
SAAAKAKLRDQPPSRPKPRQKKSPGSCANGNAADAEKPTKSSATALTEEEQQQQQQQNNR
CAEIRAQVEGFLKDSSRKELQFPSSFNSHDRLLVHQIAEELGLVHESKGEGKQRCVSVCR
PPVSAPAERPPRGGGGGGGGGGGGGGGGEEVEVRKDDDAPEETIPNPQREPLCQPPLDLK
RLHLERMEREQQKRDRHAQQKKQPINLPPAPAQSSKKPKSAKGKTRVKTGACGIAAAAAP
DDDFDALIDAVIKAESVCSFVRCKASVRTLGQLCLFCNRQYCLSHHIPEVHGCGDEAKSH
ARMRISKEGVLYAGSGKKDKSMDPNKKAYLQRKLDSKLKDMSSQRRPKNKENDS
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atggcagttgaaaagtttgtgtcaaagacactcgagctgctacaggaggagagagaggcg
gaaatagaggagaccaggatatggcaggagaacatctctctcaaggatcttcaaaataaa
ggagtttgcctgctgaaattgcaggtcgggagtcagtccacgggcctgtacggtcgcacg
gtaatcatcctcgagccgaggaagcatcttggtttctcctctctgccgagcaacagcttt
ggacccggggacatagtgggcttgtatgacaccggtgggtgcacccccgcctcacaggtg
ggcacaggaatagtgacgagggtcagccaggcgtccatcagcgtggccttcgacgactca
aaggacggcctcaggtttgatacggatgcgcttcacaacctcttaaagttggcaaatgac
gtcacctacaaacggatgaagaatgccttgaacacactgaacggatacagccatggacca
gctgccaatctgataaacgttctttttggagacacaaaaccgtctcatcaatcacagaca
aatgaggttaaattctttaactccaacctggatgactctcagagagaagccgtgtccttt
acgctgtctcagagagaagtggctgtgattcatggaccaccgggcactgggaaaaccacc
acagtggtggagatcatcctgcaagcagtgaaacaaggccaaaaggtcctctgctgcgcg
ccctccaacgtggccgtggataatttagtggagcggttagcccggtgcaaagcaaaggtc
ctcaggctgggtcaccctgcccgacttctggagtccatacagaaacattcgctggacgcc
atcctcgcgcagagcgacaacgccggcatcatcgctgatatccgtaaagacatcgataaa
gcatttattggaatgaagaaaatgcgtgaaaaaggcgagcgggtgaacttcaaaagagaa
ataggggagcttcgaaaagagctgaagtcgagggaagcgaccgccatggcacagatcctg
aaacgtgcggatgtcgtgttatcgaccaacacgggtgcgtccagagacggccccctgaag
ctcctgccggaggagcattttgattgggtggtgatcgacgagtgcgctcaggcgctggag
agcagctgttggatcggcctgctccgagcacgcaagtgtgtcctggctggagactacaag
cagttaccacctaccatcaaatcgcaaaaggctgcatcaaacgggctgtctctcagcctc
atggagaggctcatccagatgtacggcgactctgtggtccgtatgctgaccgttcagtac
cgcatgaacagtgccatcatgagttgggcctccaaagagatgtaccagggaagactaacg
gctcacagctctgtggagagacacttgctgaaagatttaccaggagtctcctgcgtcgaa
gagaccagcacgccgcttcttcttattgacactgcaggctgcggtctgagtgagatggag
gtcacagatgagcagtccaaaggcaatccgggtgaggtagacattgttgaactgcacata
aaggccttgactggagccggagttaaagccaaagacatcgctgttattgctccgtacaat
ctacaggtcgatcttctgcgtcagaaactttccgcgaggcatccggagctggagatcaag
tctgtggatggattccagggccgagagaaggaggctgtggtgctgtcgttggttcggtcc
aacaggaaaggggaagttggatttctcgcggaggacagaaggatcaatgtggccgtcacg
cgcgccagacgtcacgtggctgttgtgtgcgacagccagaccgtgcagagtcacgctttc
ctcaagtccctcgtcgttcatatgacccagtgtggcgaggtgagaacggcatttgagtac
atccaagacgtcgtgccgcagaactacacccgtgaccacaaagacacgaaggccaacgca
tctgccgccgccaaagcgaagcttagggatcagcctccgagccggccgaagccgcgacaa
aagaagtccccgggtagctgcgctaatgggaatgccgccgatgcagagaagcccacaaag
tcctccgccacagcgctgacggaggaagagcagcagcagcagcagcagcagaacaaccga
tgcgctgagatcagagcgcaggtggagggctttctgaaggactccagtcggaaggaacta
cagttcccatcatcgtttaactctcacgaccgcctgctggtgcaccagatcgctgaggag
ctgggcctcgtgcacgagagtaaaggtgaaggtaaacagaggtgtgtctctgtctgcagg
cctccggtatcggccccggccgagaggccaccgcgaggaggaggaggaggaggaggagga
ggaggaggaggaggaggaggaggagaagaagtagaagtaagaaaagatgacgacgctccg
gaagaaaccattcccaatccccaaagagaaccgctgtgtcaacctccattggacctgaag
cgtttacatttggagcggatggagagggagcagcagaagagagaccgacacgctcaacaa
aaaaagcaaccgatcaacttgccgccggctccggcccagtcgtcgaagaagcccaagtcc
gctaaaggaaagacccgagtgaagacgggcgcatgcggcatcgccgcggccgccgctccg
gacgacgactttgacgcactcatcgacgccgtcataaaggctgagagcgtgtgcagcttc
gtcaggtgtaaagcttctgtgcggacgctcggacagctttgcctgttctgcaacaggcag
tattgtctcagtcatcacataccagaggttcacggctgtggggatgaagcaaagtctcat
gctcggatgagaataagcaaagaaggcgttctgtacgcagggagtgggaagaaagacaaa
tccatggaccccaataaaaaggcctatctgcaaaggaagctggactctaaattaaaagat
atgtcatcgcagaggagaccgaaaaacaaagaaaatgacagttag
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