Gasterosteus aculeatus (three-spined stickleback): 120808977
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Entry
120808977 CDS
T07457
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120808977 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gat03019
]
120808977 (edc4)
Messenger RNA biogenesis [BR:
gat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120808977 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
120808977 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_Prp19
WDR55
Motif
Other DBs
NCBI-GeneID:
120808977
NCBI-ProteinID:
XP_040018333
LinkDB
All DBs
Position
XIX:complement(3008862..3031677)
Genome browser
AA seq
1422 aa
AA seq
DB search
MNPVSLVPQHMASNSNIDIEDATQHLRDILKLDRPGNTTDASSDNLRMATLNRELNGLLG
AAGLLGGTDRSSMSDSTRPISTDLCSTQECQIICLSGDDGSTCTPITSNNVEIVASQDTS
INSKARGSNKVKIQPVAKYDWEHKYYYGRLIAVSNSFLAYAIRGANNHAMIRVLSVTFAE
RSLLKGFTGAVTDLAFAHLDSSLLGCVDEAGNLMVWQLTCTGSKIFDQVVVHIRRPEDSP
LNSHRRLIWCPFIQDDNDDNQDDINQTLALLHEDLAEVWDLEALRANHSSWPVDDTDVKE
GLIIVKGHTQRVSEGALSPDGTVLATASHDGYIRFWQIYIEGVQDKPRCLHELRPHGGRP
LSCLLFCDNHKRQDPDVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDLFNSSVLP
SLKASLDLASEYLILTDVQRKVLYVMELRQDLEKGKASFTAVSEFLLTHPVLSFGVQDVS
HCRLRHTEVLPAEEETESMTTEGTQGLTESKSGIQIKLYCVHTKSLQDVQIWFQPSSPVF
LPNSDTQDGFGFSDNLTDHSSDKESGSGSQTDLRKIPSLPATTDFLSTSGASSGTKLMTP
DAFMTPSTSVPASPGSSVSSLTVVTAINSNSDLTNSAMDEVSQSPSRAENNSSSSSSSLT
LSSSSPRAVSAVLLPGLENLQVGHSSNFYQPLDTLTMEGLFSHQHTPHLHPQALASPSGP
LALDSPQVLDSPLLPPLASPTRARSPDVISSASTAMSQDMPEIASQTLQLQRSHVSGLEP
VPLSALQTDSMASAASALHLLTSPRSANNGLLPPELGGADGPVGGGDSEPRLSHTPSLLE
NALLQENPGVGGGSSDGNVGHTSWPAAPDITRETRNSLRDNGLGEYSREESKDRRLSSPY
HRRSYHLTQIDSQDAGGEQSDPNDEGSGLVSSSVNCGSRSSHRLPVKDWKTSPRASPKVK
RKTKKDDGELSQSRQMDSGQMNAEVQDELLMLLRSQQRELTDLRGQIEAMQSTIMAQVEH
VLTNHQEQEQRRLERVLAERQSDQQQLQEQLSSTLSSVLTNRMDKVLREEMKKTVPPSIS
KSLEPVTGQLSNTIAAKLTAVEITLKDNVSKVVKSKNTTDAIGRAAAEAMQGPIQAAYKD
TFQSIVLPVFERGCQSMFQQINDSFKQGTQEYIQQLESHMKNKKQREQETRDPVISQLQQ
TIETFQSSTDQLANNITANVRAEVQHQIQMMVGNLQESILSHVQRIVKGEVSMAMKEQQA
VVTSSIMQAMRSAASTPVPTAHLDYQTQQANILQLLQQGQLNQAFQQALSATDLNLVLYV
CETIDSQQVFGQHPCPLSQPVLLSLIQQLSSNLTTRSELKISYLEDAVMNLDHGDPLTRD
HMSSVLAQVRPKLYTFLQQDPHSPLSKRARRLMMMLQGLVSH
NT seq
4269 nt
NT seq
+upstream
nt +downstream
nt
atgaacccagtttcccttgtcccccaacacatggcgtccaattctaacatagatattgag
gatgcgacccagcatcttcgggacatcttaaagctcgaccgtcccgggaacaccaccgat
gcatccagtgataatctaagaatggcaactttaaatagagagctgaatgggttattggga
gcagcaggccttctgggaggtacggatcggtcatccatgtcggactctaccagacccatc
tccacagacctgtgcagcactcaggagtgtcagataatctgcctttctggtgatgatggt
tccacctgtacccccatcacctccaacaacgtggagatagtggcaagtcaggataccagc
atcaatagcaaggctcgtggcagcaacaaggtaaagattcaacctgttgcgaagtacgac
tgggaacacaagtattattatggcagactgattgcggtctccaactccttcctggcctat
gccatcagaggagccaacaaccatgcgatgattcgcgtcctgagtgtgacttttgccgag
cgctctctgctgaagggcttcaccggagctgttacagatctggcctttgcccacctcgac
tcctcgctgttgggctgcgtagatgaggcgggcaacctcatggtctggcagctcacctgc
actggaagcaagatatttgatcaggtggtagttcatatccgacggccggaggactctccg
ctgaactcccaccgccgcctcatctggtgcccgttcatccaggatgacaacgatgataac
caggacgacatcaaccagacgttagcccttctccacgaggacttggcggaggtgtgggac
ctggaggcgttgagagccaaccacagcagttggcccgtggatgacacggacgtgaaagaa
ggtctcatcatagtcaagggacatacccagagggtcagtgagggggctctgtctccggat
ggaacagtgttggccacagccagccacgatgggtacatcaggttctggcagatatacatt
gaaggggtacaggacaagccacggtgtcttcatgaattgcggccccacggaggacgtccc
ctctcctgccttctgttctgcgacaaccacaaaagacaggaccccgacgtacctttctgg
cggttccttataactggagcggatcagaaccaggagttgaaaatgtggtgcactgtttcc
tggacctgcttacagaccatcaggttttcaccagatttgttcaactcctcagttctaccg
agtctgaaggccagtctggacctcgcttcagagtacctcatcctcactgacgtccagagg
aaggttctgtatgtgatggagctccggcaggacctagagaaaggaaaggccagttttaca
gcagtgtcagagttcctgctgactcaccccgtgctcagctttggggtccaggacgtctcc
cactgccgactgcgacacaccgaggttctccccgctgaagaggagactgagagtatgacc
acagagggcacgcaaggactaaccgagtcgaagtctgggatccagattaaactctactgt
gtccacaccaagagtctacaggatgtccagatctggtttcagcccagctctccagttttc
cttcccaattctgatactcaggatggttttggcttttcagacaatctcactgaccacagc
tcggacaaggaatccgggagcggctcccaaactgacctaaggaagatcccctctcttcct
gctaccactgacttcctgtcaacctcgggggccagcagtgggaccaagctaatgactccg
gatgccttcatgacaccaagcacttcggtaccagcatccccgggcagcagcgtcagcagt
ctgaccgttgtgacagcgatcaacagcaactctgacttaactaacagcgctatggatgaa
gtcagtcagagtccaagcagagcagagaacaacagcagcagcagcagcagcagcctgaca
ctttccagcagcagcccaagagctgtttctgcagtgcttctgcctggactagagaaccta
caggtgggacacagttccaacttctaccagcctcttgatacactcactatggaaggcctt
ttctctcatcagcacactcctcatctacatcctcaggcattagcatcccccagcggtcct
ctcgcactggacagccctcaggttctggactcccccctccttcctcctctggcttctccg
accagagcccgctcccccgacgtcatctcctcggcctccaccgccatgtcccaggacatg
ccggagattgcatcgcagaccctacagcttcagcgcagccacgtttccggtttggagccg
gtgcctctctccgccctccagacggacagcatggcttccgctgcatctgccctgcacctg
ctcacctccccgcgctcagccaacaacggcctgttgcccccggaacttgggggtgcagat
ggtccggtgggcggaggagattctgagcccaggctcagccacaccccgtccctgctggag
aacgccttattgcaggaaaaccccggggtcggtggaggctcttcagacggcaatgtgggc
cacacatcgtggccggctgcacccgacatcaccagggaaaccaggaacagtctcagggac
aacggcctcggagaatattcgagagaggagtcgaaggacagacgcctcagctcaccttac
catcggcgctcctatcacctcacacagattgacagtcaggacgccggcggggagcagagt
gacccgaacgatgaggggtccggcctcgtatcatcctcagtaaattgcggctctcgttcc
tctcaccgactaccggttaaggactggaagacatcaccacgagcctcacccaaagtgaag
aggaagaccaagaaagatgacggggaattgtctcagtccaggcaaatggactctggtcag
atgaatgccgaagtgcaggacgagctgctgatgctcctgcgtagccagcagagggagctc
actgacctgcgtgggcagatcgaagccatgcagagcaccatcatggcccaagttgagcac
gtcctcaccaaccaccaggagcaggagcagcggagactagagcgggttctggcagagaga
caaagtgaccagcagcagcttcaggagcagctcagcagcacccttagctcggtgctaacc
aacaggatggacaaagtgctccgggaggaaatgaagaagaccgtcccaccaagcatctct
aaaagtctggagccggtgacggggcagctgagcaacaccatcgctgccaagctgaccgcc
gtggagatcacactgaaggataatgtcagcaaggtggtcaagtccaagaacacgacggat
gcgattggtcgagcagcggccgaagcgatgcaggggcccatccaggcggcctacaaagac
accttccagagcatcgtgctgccggtctttgagagaggctgccagtccatgttccagcaa
atcaacgacagctttaaacaaggcacccaagaatacatccagcagctcgagagccacatg
aagaacaagaagcagagagagcaggagacacgagaccccgtgatcagccagctccagcag
accatcgagaccttccagagctccaccgatcagctggccaataacatcacggctaatgtg
cgggccgaggtccagcaccagatccagatgatggtgggaaatttgcaggagtcgattctg
agccatgtgcagcgaatcgtcaaaggcgaggtgagcatggcgatgaaggagcagcaggcg
gtggtcacctccagcatcatgcaggcgatgaggtcagcggccagcactcccgtccccaca
gcgcacctcgactaccagacgcagcaggccaacatcctgcagctcctgcagcagggccag
ctgaaccaggctttccagcaggctctgtcggccacagatctgaacctggtcctgtacgtc
tgcgagaccattgactcccagcaggtgtttgggcagcacccgtgtcctctcagccagccc
gtgctgctgtcgctcatccagcagctctcctccaacctcaccacccgctctgagctcaaa
atcagctacctggaggacgccgtgatgaatctggaccacggcgacccgctgacccgagac
cacatgtcctcggtgctggcccaggtcaggccgaagctctacaccttcctgcagcaggac
ccccacagcccgctcagcaagagggcgcgccgcctgatgatgatgctgcagggcctcgtc
agccactag
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integrated database retrieval system
