Gasterosteus aculeatus (three-spined stickleback): 120809090
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Entry
120809090 CDS
T07457
Symbol
spg11
Name
(RefSeq) spatacsin isoform X1
KO
K19026
spatacsin
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gat03400
]
120809090 (spg11)
DNA repair and recombination proteins [BR:
gat03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
120809090 (spg11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
Rep_fac_C
Motif
Other DBs
NCBI-GeneID:
120809090
NCBI-ProteinID:
XP_040018613
UniProt:
G3NZB9
LinkDB
All DBs
Position
XIX:complement(15188232..15206107)
Genome browser
AA seq
2386 aa
AA seq
DB search
MLEAAQAPEGSSIEVCVIPENQHCGPVADIQRAEMAPGGSLVGSLGAGGWLKIWNPADRD
APPATLDGCYADFSWEEEESEDDVIGRGLRPVVRLLAVEAQLDLQLVEVEAEASVTAVCV
SQCPSVRLLQMVREQDGSAFELHSLRVLSFAAGCACVLLNSDWLLRLHWLQMEEQPQTLS
CCSIQQSEDSRLSAVHRSVCRDTLFTLSCTGLISVHHITDGSLLASIDLPAYLRSLQTED
DLISSSSSPSFSSSPFCLLQVSTDLSTAVAVCQSHSAVAIDLDHYFSLYPDQLLCAAPPR
RPPLLHPADQDGVPSSEQSLAALGSTFSADRSWEARLASMSSRAHRSAEDSSPSSSSSWS
SSLLHLRPWGASARSRVPRGRATISFPVAPPSSPSLLSVSQFSAQLTFVAPGNRRPTVAL
WDFPSGRVSLHRAEGEAAPVQRCGERQHRLLLREAGVFQLLFSVSQQDLLTRLMLFGSAA
TVDAVCHLNSWGRCSIPVHALQAGLKNRQLDTVDFYLKSKENILVPAASTKSLTARFQEL
CPALDLLCSAVSDSHIEAQSRQYFEQLLNVTMNFINTQTRSVLTNTQLEDEGVAGCVEAL
DRYVTELRGYMKKFPWPAAADASSPADRAQGGALWDEWAELPTEEVVRQAVLTNQIPRAQ
DLLRGQGRPECRLSALRAEGLRQTFRCLQLRDLQTADALLLNMGFSVKEQLHSICVYTAD
QDLREFLVEELSGRSCFPEEEMRGVEFIREMERLGSLPAARCPADATPCRLHLLHMVRRE
EVGAGEELLEELVAQRRPEEDKLGLWTNLRLDWVRNWDPSCRTSILLSRCPPAEVTSCNP
AVVWRYLTALHDQRRVVDWIQNQENPGGSRWPELTPELVNNNTACSSYMREQVLDLLARR
GVFLPEELADLEQLLWRLAQGGGVMASPPPVPQHRSPLGLDLHGLFVSFCVDRGLKYLLY
AYLERHRLTPRNCPLLTNRSLSESRPWFEMLVKIQEITRDLSDPALVFQASLTSAQVLLP
GSQPSLSSLLLEGHSLLALAAIMFSPGGIDQVVARGEILGRSERTVDPQLLKMALAPHPK
LRAVLFPAGPRGSGPLSDISVYHLLQSLHPLDPTRLFGWQSANTLNSTETSELPHFSSPP
LVGRFALVENLDFLYYLSHGRPSFAFATFLVRQLAGCTDVTSLLQQASHQAHRLALRSFD
VPSVTSAVVCFYELIGVCSLKVRVDVEAMNRILQYWSQQYTEEVHNLVSKGVKLAEAEPG
PAEELIGYLEAAVTDSLEQKNICRSSYEAAQEWALPVQFCQLHGLQLSSVYPAHCADDGQ
FVHFLLFVQLHSFPPSQVRSLTAKFSPALKAHLRLAFQDLQVSSRGRRPCDSEEQPVSPK
AEEPPRELFRVLLRSQEEAAPCRYLLKEALVQRCPTLAVMAACQQGAEPLPCLCAWLLTS
VCNAAAAEATTHLAEAPQHHEWTLHDLSIIWRTLLGRGHVRPLLRGFQLFQRDCPLVLVL
RMFELCCDYKNFSEAKAKLLDFQRTLVTLRNGGGAPPGGLPLQWVECQASVLLLSMLQRC
TSQFDLHRLLLLLADVDKLLKSNGPDFRKLSQLSMLLQGSEVNLSPRLLQCSSPSVQQEE
FQAAVDALQAAGRYSQARQVALLAGLPVHRLLLNQLLQEVYCQKSKQQWGRLETRIGLWR
RCHEQLKAEGADPESASQFFLSQANTPSPRAELPDLQEGCLLLCLAAHWLAACGTATRDR
LEVLEKKLWICRLQRHVLAVAMETASVFDLPPPAATSETNTYEVLMKEFSFSGIPGLNTD
ACLSLEGLPGPSEEPSIDPVLSLEERGGLAALVGQLLNEGGIHEASRVCRYFSLYHRDVW
LVLRCRGLASGELDPEPQEEASEILPKKSIPSSPSMSSLSSFVVLPLPEDEVALQLQKLV
DQCRHGKSYCKQVLSLYQLSKELQCTFGEVCREEPRSVLEKLLLSEQPERFRKARAFIVA
QGLSADSVAQLVCSAVVQALLASAQDLQLAERRVYRLSDGRHSLIQLVKLCDDPNLVGVK
LLENLNTAPLRDLNCIVELLVVAHDCFSLTCNMEGIVRVLQSARHLSHAYLAPGEHYSLL
VRLLTGIGRYNEMTYVFDLLHQNHRFEMLLRKKMDTDRGQSSSLKTALLDYIKRCLPADS
EKHNMVALCFSMRREIGENHEMAARTQLKIIESQAWVVSPDLKSSLVKVLGLLRDAAESF
AKDSCVRQASRCVRTAKLIALQLHLLNRGSDLRVVNLRPAELLSAVTALPRCYQVFVVSE
AYSYSPDWAEVLYQKVILNGDFVYLEELKRHRPLTSGLFEDIFKKLDGAPGSAAANAAAN
VRRLLPHCEDVYARYRLAYQHGLYDVTKALLEDAKTSGYLSDRLAG
NT seq
7161 nt
NT seq
+upstream
nt +downstream
nt
atgttggaggcggctcaggctccggaggggagctccatagaggtgtgtgtgatcccagag
aaccagcactgtggcccggtggcggacatccagagagccgagatggctcccggaggctcc
ctggtcggttcccttggggccggcggctggctgaagatctggaaccccgcggacagagac
gctcctccggccacgctggacggctgctacgcggatttttcctgggaggaggaggagtca
gaggatgatgtcatcggtcgaggcctccgccccgtcgtgaggttgctggcggttgaagct
cagctggacctgcagctggtagaggtggaggcggaggcctccgtcacggccgtctgtgtg
tcccagtgtccttcagtccgcctgctgcagatggtcagggagcaggacggcagcgcgttc
gagctgcactcgctgcgcgtgttgtcctttgctgctggatgcgcctgcgtcctgctgaac
tctgattggctgctgcggctgcactggctgcagatggaagagcagccacagacattgtcc
tgctgcagcatccagcagagtgaagacagccgactctctgctgtgcaccgcagcgtctgc
agggacacgctgttcaccctcagctgcaccggactcatatctgtgcatcacatcactgac
ggcagtctgctggccagcatcgacctgccagcttacctgaggtctctccagacagaggac
gacctcatctcctcctcctcctctccctccttctcgtcctcccccttctgcctcctccag
gtgtcaactgacctcagcacagccgtagccgtctgtcagtcccacagcgcggtcgccatc
gacctcgaccactacttcagtttgtatccagaccagctgctgtgtgccgcccccccccgc
cgtccccccctcctccacccagctgaccaggacggcgtgccgagctcggagcaaagcctc
gccgccctcgggtcgaccttcagcgcagaccgctcctgggaagctcgtctggcctccatg
agcagcagagcccataggtctgcagaggactcatccccctcctcctcctcctcctggtcc
tcctccctcctccacctgaggccctggggggcctcagcccgcagcagggtgcctcgcggc
agggccaccatctccttccccgtcgccccgccctcctccccttccctgctcagcgtgtcc
cagttttctgcccagctgacctttgttgcccccggcaaccgacggcccaccgtggccctc
tgggacttcccgtccggcagagtgagcctccaccgggccgaaggggaggcagctcccgtg
cagcgctgtggggagagacagcaccgcctgctgctgagggaggccggtgtcttccagctc
ctcttctccgtttcccagcaggacttgctcaccaggttgatgttgttcggcagcgcggcg
actgtggacgccgtgtgtcacctgaacagctgggggcgctgctccatccccgtgcatgcc
ctgcaggccggactgaagaaccgtcagctggacacggtggacttctacctgaagagtaaa
gagaacatcctggtccctgctgcctccacgaagagccttaccgcccgcttccaggagttg
tgtcctgcgttggatctcctgtgttcagctgtcagtgattctcacatcgaggctcagagc
cgtcagtactttgagcagctcctcaacgtcaccatgaactttatcaacacgcagacccgg
tcagtgctgaccaacactcagctggaggacgagggcgtagcgggctgcgtggaggctctg
gaccgctacgtcaccgagctacgaggctacatgaagaaattcccctggcccgcggcggcc
gatgcctcgtcccccgctgaccgcgctcagggaggggccctctgggatgagtgggcggag
cttcccacagaggaggtggtccgtcaggcagtcctgaccaatcagatccccagggctcaa
gacctcctaagggggcagggccggccagagtgccgtctgtcagccctgagggcggagggg
ctgcggcagacgttccgctgcctgcagcttcgagatttgcagaccgccgacgcgctgctc
ctcaacatgggcttcagcgtaaaggagcagctccacagcatctgtgtctacaccgccgac
caggacctcagggagttcctggtggaggagctgtcggggcggagttgtttcccagaggag
gagatgcggggggtggagttcatcagggagatggagaggttgggctcacttcctgcggcc
cgctgccccgcagacgcaacgccatgcaggctgcacctgcttcatatggtccggagggag
gaggtgggcgctggcgaggagctcctggaggagctggtggcccagaggaggcctgaggag
gacaaattgggcctctggacgaacctgagactggactgggtgagaaactgggacccaagc
tgccggacctccatcctcctgtccagatgtcctcctgcagaggtgacctcctgtaacccc
gccgtggtgtggcgctacctcaccgccctccacgaccagcgccgggtggtggactggatc
cagaaccaggagaaccctggaggctcccggtggcccgagctgaccccggagctggtcaac
aataacactgcgtgcagctcctacatgagggagcaggtcctggacctgctggccaggagg
ggggtgttcctcccggaagagctggctgacctggaacaactgctgtggaggctggctcag
ggcgggggggttatggcttcgcccccccctgtccctcagcaccgctccccgctcggcctg
gacctccacggcctctttgtctccttctgcgtggaccgcggcctgaagtacctgctctat
gcctacctggagcgccacaggttgacgcctaggaactgtcccctcctgaccaatcggagc
ctgtccgagagccgaccctggtttgagatgctggtgaagatccaggagatcactagggat
ctgtcagatccagctctggtcttccaggccagtctaaccagtgctcaggtgctgctgccg
ggcagccagccgtctctcagcagtctgctgctggagggccacagcctcctggccctggcc
gccatcatgttctcccccggaggaatcgaccaggtggtggctaggggtgaaattctcggc
aggtcggagaggacggtggacccccagctcctgaagatggcgctggccccccacccaaag
ctcagggccgtcctgttccccgctgggccccgaggatccggccccttgtcggacatctcc
gtctaccacctgctgcagtcgctccacccactagacccgaccaggctgttcggctggcag
tcagcaaacaccctgaactccacagagacatcagagctgcctcacttctccagccccccc
ctggtgggccggttcgctttggtggagaacctggacttcctgtactacctcagccatggc
cggccgtctttcgcgttcgccaccttcctggtccgacaactggccggctgcactgatgtc
acgtcgctgctgcagcaggcctcacatcaggctcaccgtttggctctgcggagcttcgat
gttccgtccgtgacgtcggccgttgtctgtttctatgagctgatcggagtctgcagcctg
aaggtgagggtcgacgtcgaagccatgaaccgcatcctgcagtactggagccagcagtac
acagaggaagtacacaatctggtgtctaaaggcgtaaagctagcggaggcggagcctgga
ccagcagaagagttgattggctacctagaagctgcagtgacagacagcttagagcagaag
aacatttgcaggtcgtcctacgaggcagctcaggagtgggcgttgcctgttcagttctgt
cagcttcacggtctgcagctcagctcggtttatcccgcccactgtgccgatgatggacag
ttcgtccacttcctgttgtttgtccagctgcacagcttcccgccctcgcaggtgaggtca
ctgacggctaagtttagccccgccctgaaggcccacctgcgcctggcgttccaggacctg
caagtgtccagtcgagggaggcggccctgtgactctgaggagcagcccgtgtccccgaag
gccgaggagccccccagggagctgttccgtgtcctcctacggagccaggaagaggcggcg
ccctgcaggtacctactgaaggaggcgctggtgcaacgctgcccgacgctggctgtgatg
gccgcctgtcaacagggggcggagcctctgccgtgcctctgcgcgtggctactgacctcg
gtctgcaacgctgcggccgctgaagccaccacacacctggccgaagccccccagcaccac
gagtggacgctgcatgacctgtcaatcatctggaggacgctgctggggcggggccatgtc
aggcccctcctacgaggcttccagctcttccagcgggactgtcctctggtgttggtgctg
aggatgtttgagttgtgctgtgactacaagaacttctccgaggccaaagccaagctgctg
gacttccagaggacgctcgtcaccctgaggaatggcggcggggcacccccagggggcctc
cccctgcagtgggtagagtgccaggcctccgtgctgctgctctccatgttgcagcgctgc
acctcccagttcgaccttcaccggctgctgctgctgctggccgacgtcgacaagctcctc
aagtcaaacggtccagacttcaggaagctgagtcagctcagcatgctgctgcaggggtca
gaggtcaacctgtcacccaggctgctgcagtgcagttccccttccgtccagcaggaggag
ttccaggccgcagtggacgccctgcaggccgccgggcgctacagccaggccaggcaggtc
gccctgctggctggtctgcccgtccaccgcctgctgctcaatcagcttctccaggaagta
tactgccagaagtccaagcagcagtgggggaggctggagacgcggatcggactgtggagg
agatgtcacgagcagctgaaggccgaaggtgccgacccggaatcggcctcccagttcttc
ctgtctcaggcaaacacgccgtcgccccgggccgagctgccggacctccaggagggctgc
cttctgctctgcctcgccgcccactggctcgccgcttgtggcacggcgacccgggaccgg
ctggaggtcctggaaaagaagctgtggatctgccgattgcagcgtcacgtcctcgccgtc
gccatggaaacggcgagtgtcttcgacttgccgccacctgccgccacgtcggagaccaac
acgtacgaggtgctcatgaaggagttctccttctctggcataccgggcctgaacactgat
gcctgcctcagcctggagggcctccccgggcccagcgaggagcccagcatcgacccggtc
ctcagcctggaggagaggggcggtctggccgccctcgttggtcagctgctcaatgaaggg
gggatccacgaagccagccgggtgtgccggtacttctccctgtaccaccgggacgtctgg
ctggtgctgcgctgcagaggtctagcctctggggagctggacccggaaccacaggaggag
gcttcagagattctaccaaagaagagcatccccagctctccctccatgagcagtctgtcc
tccttcgtggtgctccccctccctgaggacgaggtggccctccagctacagaagctggtg
gatcagtgtcgccacggcaagagctactgcaaacaggtcctcagcctgtaccagctctct
aaggagctgcagtgcaccttcggcgaggtgtgccgtgaggagccacgctcagtgttggag
aagctgctgctgtcagagcagccggagcgcttcaggaaggccagggcctttattgtggcc
cagggcctctccgcagactccgtggcccagctggtctgctcggccgtggtccaggcgctg
ctggcctccgcccaggacctgcagctcgcagagaggcgggtctacaggctgtcagatggt
cgtcactctctgatccagcttgtcaaactgtgtgatgatcccaacctggtgggagtcaaa
ctgctggaaaacctgaacacggctccactgagagacctgaactgcattgtggagctgctg
gtcgtggctcacgactgcttcagccttacctgcaacatggagggcatcgtcagggtgctg
cagagcgcccgccacctcagccacgcctacctggccccgggagagcactacagcctgctg
gtgcgtctgctgacgggcatcggcaggtacaacgagatgacttacgtcttcgacctgctg
catcagaaccatcgctttgagatgctgctgaggaagaagatggacacagacagaggacag
agctccagcctgaagacggcgctgctggactacatcaagcgctgcctccccgcggacagc
gagaagcacaacatggtggcgctgtgcttcagcatgcgcagggagatcggggagaaccac
gagatggcggccaggacgcaactgaagatcatagagtctcaggcctgggtggtctctccc
gatctgaagagctcgctggtcaaagtgttgggtctgctgagggacgccgcggagagcttc
gccaaggactcgtgcgtgcgtcaggcgagccgctgtgtgcgcacggccaagctcatcgca
ctgcagctgcacctcctgaaccgagggtcggacctgcgggtcgtcaatctgagacccgcc
gagctgctgagcgccgtcacggcgctgccgcgctgctaccaggtgttcgtggtgtcggag
gcctacagctacagtccggactgggccgaggtgctttaccagaaggtgatcctcaacggg
gactttgtctacctggaggaactcaaacgccaccgcccgctgacctcgggtctgttcgag
gacatctttaagaagctggatggcgcccccggcagcgccgccgccaacgccgccgccaac
gtgaggcgcctgctgccgcactgcgaggacgtgtacgcccgctaccggctggcctaccag
cacggcctgtacgacgtcaccaaggcgctgctggaggacgccaagacctccggctacctg
agcgacaggctggctggctga
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