Gasterosteus aculeatus (three-spined stickleback): 120809160
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Entry
120809160 CDS
T07457
Symbol
cntn1a
Name
(RefSeq) contactin-1a isoform X1
KO
K06759
contactin 1
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
120809160 (cntn1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
gat04515
]
120809160 (cntn1a)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
gat00537
]
120809160 (cntn1a)
Cell adhesion molecules [BR:
gat04515
]
Immunoglobulin superfamily
Contactins
120809160 (cntn1a)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
gat00537
]
Others
120809160 (cntn1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
ig
Ig_2
fn3
V-set
Ig_DSCAM-DSCAML_C
Ig_5
C2-set_2
Pur_ac_phosph_N
Ig_4
Motif
Other DBs
NCBI-GeneID:
120809160
NCBI-ProteinID:
XP_040018725
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All DBs
Position
XIX:18533523..18581939
Genome browser
AA seq
1057 aa
AA seq
DB search
MHPRAVCAETIGKPGSPADVPPAELLTVTPPGGPHFNIMLHLTVLLHLLVLSLSPADALT
HEEVPDFYGDEATGYGPVFEEQPVDTIYPEESPEAKITMSCRARANPPATYKWMLDNVEI
DLNTQSSHYDLVGGNLVISSPIKTKHVGQYFCLATNIYGTVASREASVQFGYLDLFSSEE
RESVYVKEGQGAVLLCAPPPHYPDELSFRWILNEFPTFIPLDKRRFVSQITGNLYISKVD
SSDSGNYSCIASSQSISKSVFSNYIPLVPLAERPIRKYPADLKVKFPDTTALVGQNLTLE
CFALGNPVPEIRWKKLEGKLPSNHEVRMAGANLHLYNVQFEDAGRYQCEAVNSKGKDYHA
ARVSVEAFPKWVEHISSTEKDLGRDYTMSCTASGKPQPRIRWLKNGQPSHRKEMRFSSLT
FDDSGMYQCIAESHHGLLYANAELRVYACAPTFEHNPVKRVLAPKNGRVVIDCRPKAAPK
PSFSWSKDTELLHNSTRLSIWEDGSLEILNLTRADEGRYTCFAENDRGKANSTGSLLVTD
STKITLAPSNADVKVGEDTTMQCAASHDPSLDITFIWSLDDRVIDLHEESRHYERTLNGS
SNGELLIKNLHLKHAGRYTCTAQTPIDNVTASAHLVVRGPPGAPGGVRVVKKADKNVTLQ
WSRGADNHNPISKYTIQYRDSFSQDVWKNATTSPPDVEGNTEMATVVELFPWTEYEFRVI
ATSSLGKGEPSSPSPRDKTLEAFPMVAPSDVGGGGGTSRELTITWTPVQPQYYSGPDFGY
IVAFKPQDESQWMRVTVADPQAKRYVHKDSSIPPMTQYHVKVKAFNRKGEGPFSLTATIY
SAQDAPSEAPGRVDGKALSATDAIVWWQPLSQSNVDGYQVKYWKNKEDSEGGAQRVVVPG
SENHTRLEGMKPDSHYLVEVRGYNSAGYGPASEHLQIHTKRPPPSRAPKIIGKKFKVQSV
NIAWEQVKPLANESSIDGYKVLLRQQGHSTATLYATHEQHIDLPLHTDGNYVVEVRAHSE
GGDGAVAQINITSGSAVSAMCHRALPLLLVASLGLNL
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atgcaccccagggctgtgtgcgccgaaactataggaaaaccaggcagtcctgctgatgtt
ccaccagctgagcttctaactgttaccccacctggtggtcctcacttcaacatcatgctg
cacctcaccgtgctcctccatctcctggtcctctccctctcccctgcagatgcattgacg
catgaggaggtacccgacttctatggagacgaagccacaggttacgggccagtgtttgag
gagcagccggtggatacaatctaccccgaggagtcgcccgaggcgaaaatcaccatgagc
tgccgggcccgggccaatccacctgccacatacaagtggatgctggacaacgtggaaatc
gacttgaatacacaaagcagccactacgatttagtagggggcaacttggtcatcagcagc
cccatcaaaaccaaacacgtaggacagtacttctgtctggctaccaacatctacggcacg
gtggccagccgagaggcttccgtccagttcggatacctcgacctcttctcgtcggaggag
agggagtcggtgtacgtcaaggagggacagggggcggtgctgctctgcgctcccccacca
cattacccagatgagctgtcattccgatggatcctcaatgaattccccaccttcatccca
ctggacaagaggcgttttgtctcccagataacggggaacctctacatctccaaggtggac
tcctccgacagcggcaactactcctgcatcgcctccagccaatccatctccaagagcgtt
ttctccaactacatccccctcgttcctctggctgaacgtcccatcagaaaataccctgcc
gacctcaaagttaagttcccagataccacggctctggtcgggcagaatctcaccttggaa
tgcttcgctctggggaatcccgtacccgagatccgctggaagaagttggaagggaaactc
ccatccaaccacgaggtgcggatggcgggtgcgaatctgcacctgtataacgttcagttt
gaagacgcgggccgctatcagtgtgaggcggtgaactccaaagggaaggactaccacgct
gcacgcgtgtccgtagaagcttttcccaagtgggtggagcacatcagcagcacagagaag
gacctgggcagagattacactatgtcctgcacagccagcggcaaaccccaaccacgcatc
cgctggctgaaaaatggacaaccgtcccaccggaaagagatgaggttcagcagcttgacg
tttgacgattcggggatgtatcagtgcatcgcagagagccaccacggactcctatatgcc
aatgcggagctgcgtgtttatgcctgtgctcccacgtttgaacacaaccccgtgaagaga
gtcctggcaccgaaaaacggccgcgtggtgatcgactgtcgacccaaagctgctccgaag
ccgtccttctcctggagcaaagacaccgagctgctccacaactccacccggttgtccatc
tgggaggacgggagcctggagatcctcaacctgacgcgcgcagatgaaggcaggtacacc
tgcttcgccgagaacgaccggggaaaggccaacagcaccggctctctgctggtcacagat
tccacaaagatcaccttggcgccgtccaatgctgacgttaaagtgggtgaggacaccacc
atgcagtgcgccgcatcacatgacccctccctggacatcaccttcatctggtccctggat
gaccgagtcatcgacctacacgaggagagtcgccactatgaacgcacgctgaatggaagc
tcaaacggcgagctactgattaagaacctccacctgaagcatgctggacgctacacctgc
actgcacagacgcccattgacaacgttactgcctccgcccacctggtcgtcaggggtccc
cccggtgccccaggtggggtgcgagtggtgaagaaagctgacaagaatgtgacgttgcag
tggagccgtggagcagacaaccacaaccccatctccaaatataccatccagtacagggac
tccttctcacaggatgtctggaagaacgccactacatctcccccagatgtcgaggggaat
acggagatggccacggtggtggaattgttcccctggacggaatatgagttcagagtgatc
gccaccagcagtctggggaaaggagagccgagcagcccgtcgccgagagacaaaaccctg
gaagcatttcctatggtggcgccctcggacgtcggtggcggtggaggaacgagcagggaa
ctgaccatcacgtggacgcctgtgcagccacagtactactctgggcccgactttggctac
attgtggctttcaaaccacaagatgaatcccagtggatgagggtgacggtagctgacccc
caggccaagcgctacgtccacaaggactcctccatccctccgatgacgcagtatcatgtc
aaagtcaaagccttcaacagaaaaggagagggacccttcagcctaacggccaccatttat
tcggcacaggacgctccgtctgaagctcctggacgagttgatggaaaagctctgtctgcc
acggacgccatcgtgtggtggcagcctctttcacaaagcaatgtagatggataccaggtg
aagtactggaagaataaggaagacagtgaagggggggcccagagagtggtggttcccggc
agtgagaaccacaccaggctggagggtatgaagccagactcccactacctcgtcgaggtg
cgcggctacaactcggcaggctacgggccggccagcgaacacctccagatccacaccaag
agaccccctccaagtcgggctcccaaaatcattggtaaaaagttcaaggtccagtcagta
aatattgcctgggaacaggtaaaacccctcgctaacgagtcatcaatagacggttataag
gtgctgctcaggcagcagggccactccaccgccacgctgtacgccacccacgagcagcac
atagaccttcccctccacacagatggaaactatgtggtggaggtccgggcgcactccgag
gggggagacggggctgtggcacaaatcaacatcacaagtggaagcgccgtgtccgccatg
tgtcaccgcgcactccccctgctcctcgtggcttccctcggcctgaacctctga
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