Gasterosteus aculeatus (three-spined stickleback): 120809178
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Entry
120809178 CDS
T07457
Symbol
sf3b3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120809178 (sf3b3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gat03021
]
120809178 (sf3b3)
03041 Spliceosome [BR:
gat03041
]
120809178 (sf3b3)
03036 Chromosome and associated proteins [BR:
gat03036
]
120809178 (sf3b3)
Transcription machinery [BR:
gat03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
120809178 (sf3b3)
Spliceosome [BR:
gat03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
120809178 (sf3b3)
Complex B
120809178 (sf3b3)
Complex C
U2 SnRNP specific factors
120809178 (sf3b3)
Chromosome and associated proteins [BR:
gat03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
120809178 (sf3b3)
TFTC complex
120809178 (sf3b3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
120809178
NCBI-ProteinID:
XP_040018751
UniProt:
G3NDR5
LinkDB
All DBs
Position
XIX:complement(2330631..2349840)
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AA seq
1217 aa
AA seq
DB search
MFLYNITLQRATGITHAIHGNFSGTKLQEIVVSRGKILELLRPDANTGKVHTLLTVEVFG
IVRSLMAFRLTGGTKDYIVVGSDSGRIVILEYHPSKNMFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMIGAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKVTLETDEEMVTEIRLKYFDTIPVATAMCVLKTGFLFVCSEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQENLSPIMSCQIADLANEDT
PQLYVACGRGPRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRKHVEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPLDCLQPLSMQALPAQPESLCIVEMGGVEKQDELGEKGTI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPETNNLVVIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPEAIFGAPKAGAGQWASLVRLINPIQGTTLDQMQLEQNEAAFSVAVCRFPNTG
DDWYVLVGVARDMILNPRSVSGGFIYTYRLVSGGEKLEFVHKTPVEDVPLAIAPFQGRVL
VGVGKLLRIYDLGKKKLLRKCENKHVPNLVTGIHTIGQRVIITDVQESLFWVRYRRNENQ
LIIFADDTYPRWVTTACLLDYDTMACADKFGNISIVRLPPNTSDDVDEDPTGNKALWDRG
LLNGASQKAEVIVNYHVGETVLSLQKTTLIPGGSESMVYTTLSGGIGILVPFTSHEDHDF
FQHLEMHMRSEFPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDPHKQKSVAEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctgtacaacatcacccttcagcgcgccaccggcatcactcacgccatccacggg
aacttctcaggaaccaaattgcaggagatcgttgtctccaggggaaagatcttggaatta
ttgcggccagatgccaacacgggaaaggtgcacacgctactcaccgtggaggtgtttggc
atcgttaggtccctgatggccttcaggctcactgggggaaccaaagactacattgttgtc
ggaagcgacagcggtcgaatcgtcatcctggaataccacccatcaaagaacatgtttgag
aagatccaccaggaaacgttcgggaagagcggctgccgccgcattgtccccgggcagttc
ctggctgtcgacccaaaaggcagagccgtgatgatcggagcgatagagaagcagaagctg
gtgtacatcctgaacagagatgcggccgcccggctgaccatctcctctcccctggaagca
cacaaggccaacacactggtctaccacgtagtaggagtggacgtcggctttgagaatcct
atgtttgcctgcctggagatggactatgaggaagctgacaatgacccgacgggagaagcg
gccgccaacactcaacagacgctcaccttttacgagcttgacctcggattaaatcacgtg
gtccgcaagtacagcgaggctctggaagagcacgggaactttctcatcactgttcctggc
ggctcagatggacccagtggagttctgatctgctccgaaaactacatcacttacaagaac
tttggggaccagcctgacattcggtgtcccatcccacgccgcaggaatgacctggatgac
ccggagcgcggcatgatatttgtctgctcagctacccacaagaccaagtccatgttcttt
ttcctggcccaaactgagcagggagacatctttaaggttaccttggagacagatgaagaa
atggtcacagaaatccggctgaaatactttgacacaatccctgtagcaaccgccatgtgt
gtcctgaagaccggcttcttgtttgtgtgttcagagtttggaaaccattacctttaccag
atcgcccacctgggcgacgatgatgaggagcccgagttctcctctgcaatgccgttagag
gagggagacacattcttcttccaaccccgccccctcaagaaccttgtgctggtggacgag
caggagaacttatctcccatcatgtcctgtcagattgctgatttggccaatgaagacact
ccacagttgtacgttgcctgcggtcgagggccgcggtcaactctgagggtcctgagacac
ggactagaggtgtcggagatggccgtgtctgagctgcccggtaacccgaacgctgtgtgg
accgtacgcaaacacgtagaagatgaatttgatgcctacatcatcgtatccttcgtcaac
gccaccttggttctgtcaatcggggagactgtagaggaggtgacggattctggattcctg
ggaacgacgccgactctgtcctgctctctgctcggagaagacgcgctggtgcaggtgtac
ccagacggcattcgccacatccgagcggacaagcgtgtgaacgagtggaagactccgggc
aaaaaaaccatagttcgctgcgctgtgaaccagcggcaggttgtaatcgccctcaccgga
ggcgagctggtctactttgagatggacccgtccggccaactgaacgaatacacggagcgc
aaggagatgtctgccgacgtcgtctgtatgagcctcgctaacgttccccccggcgagcag
cgctctcggtttctggccgtgggactggttgacaacactgtccgaatcatctccttggac
cctttggactgcctccagccgttgagcatgcaggcgctgccggcccagccagagagtctg
tgtattgttgagatgggaggcgtcgagaagcaggacgaactcggagaaaagggaaccatt
ggcttcctttacctcaacatagggctgcagaacggcgtgctgctgaggactgtgctggac
ccggtgactggagacctgtcggacaccagaacgcgctacctgggctcacggcccgtcaaa
ctcttcagagtccggatgcagggacaggaagctgtcttggcgatgtccagtcgctcctgg
ctgagctactcgtaccagtctcggttccacctgacccccctgtcgtatgagaccctggag
tacgcctctggcttcgcctcggagcagtgccccgaaggcattgtggccatttccaccaac
acgctgagaatcttggctttggagaaattaggagccgtcttcaaccaggtggcctttcct
ctgcagtacactcccaggaaattcgtaatccacccggagaccaacaacctcgtcgtgatt
gagacggaccacaatgcctacaccgaggctaccaaagcccagaggaagcagcaaatggct
gaggagatggtggaagctgctggggaggacgagagggaactggctgccgagatggccgcc
gccttcctcaacgagaatctgcccgaagccatctttggtgcgcccaaagccggagctgga
cagtgggcctcgctggtgcgtctcatcaaccccatacagggcaccacgctggaccagatg
cagctggaacagaacgaagccgctttcagcgtcgctgtgtgtcggttccccaatactggc
gatgactggtatgttctggtgggcgtggccagagacatgatcctcaaccccagatcagtg
agcggtggcttcatctacacctatcgcctcgtcagcggaggcgagaaactggagtttgtg
cacaaaacccccgtggaggacgtgcccctggccatcgcgccgttccagggccgagtcctg
gtcggagtcggcaaactgctgaggatctacgacctcggcaaaaagaagctgctgcgcaag
tgtgagaacaagcacgtccccaacctggtgacgggcatccacaccatcggccagcgcgtg
atcatcaccgacgtccaggagagcctcttctgggtgcgctacagacgcaacgagaaccag
ctcatcatcttcgccgatgacacgtacccccgctgggtgaccacggcctgcctgctcgac
tacgacaccatggcctgtgccgacaagtttggcaacatcagcatcgtgcgtctacccccg
aacaccagcgacgatgtggacgaggaccccacggggaacaaagctttgtgggacagaggc
ctccttaatggggcgtcacagaaggctgaggtgatcgtgaactaccacgtcggcgagacc
gtgttgtccctccagaaaaccaccctgatccctggcggctcggagtccatggtgtacacc
actttgtctggaggcatcggcatactggtcccattcacttcacacgaggaccatgacttc
ttccagcatttagagatgcatatgcgctctgagtttcctcctctgtgcggcagagaccat
ctcagctttagatcctactacttcccagtcaagaacgtgatagatggagatctgtgtgag
cagttcaacagcatggaccctcacaagcagaagagtgtggctgaagagctggacaggacg
ccgcccgaggtctctaagaaactggaggacattcgcactcgctacgccttctaa
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integrated database retrieval system
