Gasterosteus aculeatus (three-spined stickleback): 120809423
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Entry
120809423 CDS
T07457
Symbol
lamb1a
Name
(RefSeq) laminin subunit beta-1a
KO
K05636
laminin, beta 1
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04510
Focal adhesion
gat04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120809423 (lamb1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120809423 (lamb1a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
Motif
Other DBs
NCBI-GeneID:
120809423
NCBI-ProteinID:
XP_040019155
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All DBs
Position
XIX:complement(15678616..15699861)
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AA seq
1799 aa
AA seq
DB search
MLELQLSVLLVLQVLTYAQDGGGMGGGAQDDVSLPEFTDVCTEGSCYPATGDLLIGRAHQ
LSSTSTCGLNHPEPFCIVSHLQEEKKCFLCDSSTPYDELSSPTRGHRIENVVTTFAPNRL
KTWWQSENGLENVTLQLDLEAEFHFTHLIMTFKTFRPAAMLIERSADFGKKWQLYRYFAY
DCESAFPSVSQGPMQKVDDVICDSRYSDIEPSTEGEVIFRVLDPVFRIEDPYSPRIQNML
KITNLRVKFTRLHTLGDNLLDSRMEIKEKYYYAIFDMVVRGNCFCYGHAAECAPVQGAGQ
TSEGMVHGHCMCNHNTKGLNCEKCLDFYHDLPWRPAEGRNTNACKKCNCNHHTSSCHFDM
AVFVASGNRSGGVCDDCQHNTAGHNCERCKPFYFQHPERDARDPNICQPCNCDSVGSLNG
GLCDGVTDVRVGLITGQCRCKVNVEGERCERCKQAHYGMGPEPEGCKACTCSPLGTLAGG
NPCDSETGSCFCKRLAMGRDCDQCVAEHWGLSNDMDGCRPCDCDFGGAINNQCDQVSGQC
VCRDHMFGRRCDQVESGFYFIALDHYTYEAEDAKFGPGVTVVPRPHPLDRNPTWTGIGLV
NVPEGAFLEFSVDNIPHSMEYNILIRYEPQLPDQWEEVLMTVMRPGPIRADSRCVNTVPD
DDHQMISLHPGSRYASLARPVCFESGLNYTIRLSLPLYSALSDVQSPYTLIDSIVLMPHC
KNLEIFSTSEGGDSSGNSAWETFQRYRCLENSQSVTRSPMTDICRNFIFSISAMLHQGAR
ECHCDPQGSLSTVCDPSGGQCECRSNVVGRNCDRCAPGTFEFGPNGCRACSCHPQGSQSL
FCSELTGKCVCVFGAYGRQCDRCLPGHWGFPNCRPCTCNGHTDDCDPDTGRCIDCRDHST
GHACERCLDGYYGDPLLGSGDHCRPCMCPDGPGSLRQFAGSCYVGDDTQQAVCVCNNGYR
GSRCDECSPGYYGNPGDMGGQCQPCQCNSNIDMLDPESCDSRTGECLRCLYHSEGYACQS
CKHGYYGNALLQDCRKCVCNQLGSDSSTCPSSGDCHCDRSSGQCHCLPNVVGQHCDLCAP
DTWNMASGSGCEACACDPKHSYGTSCNEISGQCSCQPGFGGRTCSECRELFWGEPEVKCH
ACDCDPRGISQQQCNKASGHCVCVEGVSGPRCDVCSRGFSGTFPNCQRCHQCFTEWDDVI
GQLTNQTHRLVNKVNAMKASGVSGPYKKSIDSMERSVADIWVVLNQNPASQPLSETQELL
QQASDLMGTLSQMLNHTERTLVQVEDQDSVVETKLDSVMSDAQKLERTVKELMDQVEFIK
NSDIRGATDSITRYFRQSLAAEVGANASTIDPGSPVETSITLRQLTEAKLNQTREEFLRK
HTEHARRLDDLAGELQTLDLAEISHKTCGSPSSGQDSCMSSPCGGLGCVDSEGQTRCGGE
GCDGVITVASNILKNTQDSEQEIISALQEVEKLSQMVSEAKVKADEAKLSAQEVLMKSNR
TKQKVLQSNEELRVLIRQIRDFLTQDGADLESIELVANEVLAMQMPTTPAQLQNLTEDIR
QKVGELGHVEDILQQSAADIQRAENLLDQARLASEEAADVKDSAEKVKQALEEAQKAQTT
ASSAIEQAAADIQNTNQLLSSVELETSHAELKLTNSTQRLQRLEKDVSLLRDKSLNISLS
TERTNQDAASISKVAEEVKEDLDSELKEKYAKVEQMIGQKAGDVVNAKKRAESLQQEAKE
LLLKASDKLQLLKDLEKSYEDNQRTLEVKAEKLVKLEAAVKELLQEISSKVTIYSTCLF
NT seq
5400 nt
NT seq
+upstream
nt +downstream
nt
atgttggagcttcagctctcggtgctgctcgttctgcaggtgcttacctacgctcaggat
ggggggggcatggggggaggggcacaggatgatgtcagcctcccggagttcactgacgtg
tgcacagagggaagctgttacccagcaacaggagaccttctgattggccgagcccaccaa
ctgtcatccacctccacctgtggactgaaccacccagaaccgttctgcatcgttagccac
ctgcaggaggagaagaagtgtttcctgtgtgactcctccacgccgtacgacgagctcagc
agtccgaccagaggtcatcgcatcgagaacgttgtcaccacgtttgctcccaacagactg
aagacctggtggcagtctgagaacggtctggagaacgtcactctacagctggacctggag
gcagagttccacttcacacatctcattatgaccttcaagacgtttcgacctgccgccatg
ttgatcgagcgctctgcagacttcgggaagaaatggcagctttatcgttactttgcctac
gactgtgagagcgccttcccatctgtgtcacagggaccaatgcagaaggtggatgatgtc
atctgtgactctcgttactctgacattgagccatccactgaaggagaggttattttcaga
gttctggacccagtgtttaggatagaagatccctacagcccccgaatccagaacatgttg
aagatcaccaacctgcgggtgaagttcaccagactgcacacactcggcgataacttgctg
gactctcgtatggagattaaagaaaagtattattatgccatctttgacatggtggtccga
ggaaactgcttctgctacggacacgccgctgagtgcgccccagtccaaggagccggccag
accagtgagggcatggttcatggtcactgcatgtgtaaccacaacaccaaaggtctgaac
tgtgagaagtgtctggacttctaccacgacctcccgtggagaccagccgaggggcgcaac
accaatgcctgcaaaaagtgtaactgtaaccaccacacgtcctcatgtcactttgacatg
gccgtgttcgtggcttcaggaaacaggagcggaggagtctgtgacgactgccagcacaac
acggccggacacaactgtgagcggtgtaaaccgttttactttcaacatccagagagggac
gccagggaccccaacatctgccaaccctgtaactgtgactctgtgggctcactcaacggc
ggtctatgtgatggggtgacggatgttcgagtcggtttgatcactggtcagtgccgctgt
aaagtcaacgtggaaggggagcgctgcgagcgctgcaaacaggctcactacgggatgggc
cccgagccggaagggtgcaaggcgtgtacctgcagtccgctggggacacttgctggagga
aatccctgcgacagtgaaacaggaagttgtttctgtaaacgtctggcaatgggccgagac
tgtgaccagtgtgtggctgaacactggggtctcagtaacgacatggacggctgtagacct
tgtgactgtgactttggaggagccatcaacaaccagtgtgatcaggtgagcggtcagtgt
gtctgcagggatcatatgttcgggagacgctgcgatcaggtggagtctggcttctacttt
attgctctggatcactacacctacgaagcagaggacgcaaagtttggacctggagtaaca
gtggtcccaagaccccaccctctggatcgcaatcccacctggacaggtatcggcctggtt
aatgttccagaaggggccttcctggagttctctgtggacaacatcccccactccatggag
tacaacatcctcatccgctacgagccccagctgcctgaccaatgggaggaagttctgatg
accgtgatgagacctggaccaatcagagcagacagtcgctgtgttaacaccgtgcccgac
gacgaccatcagatgatctcactccaccccggctcacgatatgcgtctcttgccaggccc
gtttgctttgagtctggtctgaactacacgatccgcctcagtctgcctctgtactcggcc
ctcagtgatgtgcagtctccttacacgctcatcgactcgattgtgttgatgccgcactgc
aagaacctggagatcttctcaacctcagaaggaggagactccagtgggaacagtgcttgg
gaaaccttccagcggtaccgatgtctggagaacagccagagcgtcaccaggtctccgatg
accgacatctgcaggaacttcatcttcagcatctccgccatgttgcaccagggagcaaga
gaatgccactgtgatcctcagggctcccttagcaccgtgtgtgatcccagcgggggtcag
tgtgagtgccgctccaatgtggtcggcaggaactgtgaccgatgtgctccgggaaccttc
gagttcggacccaatggctgcagagcatgttcctgtcaccctcagggttcacagagtttg
ttttgcagtgagctgactggaaagtgtgtctgtgtttttggagcgtatggccggcagtgt
gatcgttgcctgcccggtcattggggctttcccaactgccgaccctgcacttgcaacgga
cacaccgacgactgcgaccccgacactggccgctgcatcgactgccgggatcacagcact
ggacacgcctgtgaaaggtgtctggatggttactacggtgaccccctgttgggatcaggt
gaccactgtcgcccatgtatgtgtcctgatggccccggcagcttgcggcagtttgcagga
agttgctacgttggtgacgacacccaacaggccgtctgcgtctgcaacaacggatacaga
ggttctcgctgtgacgaatgctcacctggttactatggaaaccctggagacatggggggg
cagtgtcagccctgtcagtgcaacagcaacatcgacatgttggacccggagtcctgcgac
agccgaaccggcgagtgtctgcgctgcctttaccacagcgagggatacgcctgccagagc
tgcaaacacggttactatggcaacgccctgctgcaggactgccggaaatgtgtctgtaac
cagctgggcagcgactcctccacgtgtccgtcttccggggactgtcactgtgaccgcagc
agcgggcagtgccactgcctccccaacgtagtcggccagcactgcgacctctgtgcgccc
gacacctggaacatggcgagcggcagcggctgtgaggcctgcgcctgtgaccccaaacac
tcgtacgggacgtcctgcaacgagatcagcggtcagtgttcctgtcaacccggctttgga
ggaagaacatgcagcgagtgtcgagagctgttctggggagagccagaggtcaagtgtcat
gcttgtgactgtgatcctcggggaatttcacagcagcagtgtaacaaagccagcggccac
tgcgtctgtgtggagggggtctctggcccacgatgcgacgtctgcagccgcggcttctct
ggaaccttccccaactgccagcggtgccaccagtgcttcaccgagtgggatgacgttatc
ggtcagttgaccaatcagacacaccgcctcgtcaacaaggtcaacgccatgaaggccagc
ggtgtcagcggaccgtacaagaagtccatcgacagcatggagaggagcgtcgctgacatc
tgggtcgtcctgaaccagaacccagcctctcaacctctgagcgagacccaagagctgctg
caacaggccagtgacctaatggggaccctgagccagatgttgaaccacactgagcggact
ctggtccaggtggaggaccaggactctgttgttgaaacgaaactggactctgtgatgtct
gatgcacagaaactggagcgaactgttaaagagctgatggatcaggttgagttcatcaag
aactccgacatccgaggtgcgaccgatagcatcactaggtacttccgtcagtctctggcg
gctgaagttggagcgaatgcctccaccatcgatcccggcagccccgtagaaacctccatc
actctacggcaactcacagaggccaaactgaaccaaaccagagaggagttcctgaggaaa
cacactgagcatgctcggagactggacgacctagcaggagagctgcagactctggaccta
gcggagatcagccacaagacctgcggtagcccatcatcgggtcaggactcgtgcatgtcc
tctccctgtggcggtctgggctgtgtggactctgagggtcagaccaggtgtggaggcgaa
gggtgtgatggcgtaataactgtggccagcaacatcttgaagaatacccaagactctgag
caggagatcatcagcgccctgcaggaagtggagaagctctcccagatggtatcagaggcc
aaagtcaaagcggacgaggcgaagctgagcgcgcaggaggtcctgatgaagtccaacagg
accaaacagaaagtcctgcagagcaacgaggagctgagagtcctcatcagacagatccgg
gacttcctcacacaggacggcgctgacctggagagcatcgagctcgtggccaatgaggtg
ctggccatgcagatgccgaccacaccggcccagctgcagaatctgacagaggacatccgt
cagaaggtgggagagctgggacacgtagaggacatcctgcagcagagcgccgccgacata
cagcgagccgagaacctgctggaccaggcccgcttagccagtgaggaggcagcagatgta
aaggactctgcagagaaagtgaagcaagctctggaagaagctcagaaggctcaaaccacc
gccagcagcgccatcgagcaggccgctgccgacatccagaacaccaaccagctgctttcc
tctgtggagttggagacgtcacatgcagagttgaagctgactaactccacccagaggctg
cagaggctggagaaagacgtgtccctgctgcgagacaaaagtctgaacatctctctgagc
actgaacgcaccaatcaggatgcagcgagcatcagtaaggtcgcagaggaggtgaaggag
gacctggactcggagctgaaggagaagtatgccaaagtggagcagatgattggtcagaag
gcaggggacgtggttaatgcaaagaagagggcggagtcattgcaacaggaagccaaagag
ctgctgctgaaggctagcgacaagctgcagctgctcaaagacctggagaagtcttacgag
gacaatcagcggactttagaggtaaaggcggaaaagctggtgaagctagaggcggccgtg
aaggagctgcttcaggagatcagcagcaaggtcaccatctactccacctgtctcttctag
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integrated database retrieval system
