Gasterosteus aculeatus (three-spined stickleback): 120809455
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Entry
120809455 CDS
T07457
Symbol
smc1b
Name
(RefSeq) structural maintenance of chromosomes protein 1B
KO
K06636
structural maintenance of chromosome 1
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04110
Cell cycle
gat04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
120809455 (smc1b)
04114 Oocyte meiosis
120809455 (smc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gat03036
]
120809455 (smc1b)
Chromosome and associated proteins [BR:
gat03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
120809455 (smc1b)
Meiosis-specific proteins
Cohesin complex and associated proteins
120809455 (smc1b)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_21
AAA_23
AAA_29
PUMA_CC
DUF1192
Motif
Other DBs
NCBI-GeneID:
120809455
NCBI-ProteinID:
XP_040019206
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All DBs
Position
XIX:complement(13379464..13392161)
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AA seq
1238 aa
AA seq
DB search
MGYLKQIDIENFKSWRGKTVLGPFMRFNCIIGTNGSGKSNVMDALSFAMGERAASLRVKH
LRDLVHGAHIGQPVQETSSVALRYCDDEDRETVFCRTIAGDSTEYHVNGTHVTFDKYIQE
LEKIGVVSKAQNCLVFQGAVESIALKHPKERTKVFECISQSREHAEEYDLRKKAMLKAKE
DTKFHFKRKKSATLERKQVSQERIEAQKYQDLLDDLHQNCLQLSLAELYFNEKDINALSD
SLGEKQLAAAAKNNALLKTEKMVKTSKKGHGRVTREQQHIEKEIRAQEHVLSQCQSQYIK
AKVSTSHHMKKEKEACEALKKSQKLIAIKQQELAEERQEISELETIRRNYATQQKKKGTS
MERVIELDEDQLEQYKELKERARTKGAVLSQQAEKLHWEVRADNEKMVFDQRRKKEMEIA
IRNKQTQLKDLIRRADTLEEYTKSCNSSLQECRQLEESLSAELQQGRNRSEELNQELGQV
MEELGNAHLERHESKFQLRRKELLEKLCRVYPESVFGRLSDLCSPVHKTYQLAVIKVFGR
YLDAIVVSSENVARDCISYIKEECGGPETFLPINFLDVSPLNARLRELPGAKMMVDVVKI
NPGRCAGQLKKVLQFVCGNAVVCETVKKARSVAFDGKMRIKAVAQDGTLFTRAGVISGGS
SYLRTRAQCWNEKDMLRLKARKDELTAEMRDLMKLKRKDSDLKQAVANAQSAQTRLKYTK
AELENIQNNIPKCQTEISRMESELSKLDSQIQIQQDSVEAKDEEMRRIRDQINQMEDTVF
HDLCAEIGVDSIRQYEQEHLKHQTELDRKRLEFDNQYTRLNMRLEYEQDQMERQKKKLHI
MEQTINKEQRRMAEQKEDEEKLLAAVEDAQEKHLELNNQLLSKNNLVAAAKAELDLNTRS
LKEINKEMVKLQREVMSAETALERKRLFRHNMLLACKIQSLPVTLLSGSLDEISEVQLDT
ESESTSATLSIYEREAQLVVDYSSLEPELRSLQAEEEVEAFLEQLEKSVSSIKRVLCHTS
VPNMKALAKMKDVKDKLEEVTDAFNDSAKAARKCIQEFEQVKGRRLWLFNRCFEHVCVVI
DQIYKRMCRNSSAQAMLSAENPDEPYLGGINYHCVAPGKRFMSMDNLSGGEKAIASLALL
FAIHSFRPAPFFILDEVDAALDNTNIGKVTSFIREESRENMQIIVISLKGEFFSKADALL
GVYSDFKNCMFSRIVSVDLRRYPLVEENIEAQRNRGIA
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
atggggtatctcaaacaaattgatattgaaaacttcaagtcatggcgggggaaaaccgtc
ttaggtccattcatgcgatttaattgtataattggcacaaatggatctggcaagtccaac
gtgatggacgccctgagctttgccatgggggagcgggccgcctctctgcgggtgaagcac
ctcagggacctggtacacggtgcccacatcgggcagccggtccaggaaacgtccagcgtc
gccttgcggtactgtgacgacgaggaccgggagaccgtcttctgccgcaccatcgcgggt
gactctaccgagtatcacgtcaacggtactcatgtcacttttgacaaatacattcaggag
ttggagaaaattggtgttgtgtccaaagctcaaaactgcctggtgttccagggggcggtg
gagtccatagctctgaagcacccaaaggagaggaccaaggtgtttgagtgcatcagtcag
tcgagagagcacgcagaagagtatgacctgaggaaaaaggccatgctgaaggctaaagag
gacacaaagtttcacttcaagaggaagaaatcggcaactctcgagaggaaacaggtgtcc
caggagagaatagaggcccagaaataccaggacctattggacgaccttcaccaaaactgc
ttgcagctgagcctggctgagctctactttaatgagaaggacatcaacgctctcagcgac
tccctgggggagaaacagctggctgcagctgcaaagaacaacgcgctgttgaagacagag
aaaatggtcaaaacttccaagaagggacacggacgtgtcaccagagagcagcagcacatc
gagaaagagatccgcgcccaggagcatgtcttgtctcagtgtcaatcccagtacatcaaa
gccaaagtcagcacctcccatcacatgaagaaagagaaggaggcctgtgaagccctgaag
aagagtcagaaactgattgctatcaaacagcaggagctagcggaagaaaggcaggagatc
tctgagctggagacgatccggaggaactatgcgacgcagcagaagaagaagggaacgtcc
atggaaagagtcatcgagctggatgaggatcagttggagcaatacaaagagctgaaggag
cgggcccggacgaagggggctgttctcagccagcaggcagagaaactgcactgggaagtg
agagcggacaacgaaaagatggttttcgaccagcggcgtaagaaggaaatggagatcgcc
atcaggaacaagcagactcagctgaaggatttgatacgcagggcagatacgctagaggag
tacaccaagtcctgcaactcctcccttcaagagtgccgtcagctggaagagagcctcagt
gcggagctgcagcaaggccgcaaccgcagcgaggagctgaaccaggaactgggccaggtt
atggaggagctggggaacgcacatctggagagacatgagagcaaattccagctgcggcgc
aaagagctgctagagaagctgtgcagagtctacccggaatcagtgtttggtcgtctgtct
gacttgtgcagccctgtccataagacgtaccagctggccgtcatcaaggtgtttggccgc
tacctggacgccatagtggtgtcctcagagaatgtggcccgtgactgcatctcttacatc
aaggaggagtgcggtggacccgagaccttcctgcccatcaacttcttggatgtgagtcct
ctgaatgcacggctgagggagctgcccggtgccaagatgatggttgatgttgtgaagatt
aaccctgggagatgtgccggccagcttaagaaagtgctgcagtttgtgtgtggcaacgct
gtggtgtgcgagaccgtcaagaaagcaagaagtgtggcctttgacggaaaaatgcgcatt
aaggcggtggctcaggacgggacgctgttcacgagggcaggcgtgatctcgggaggctcc
agctacctgcggaccagagctcaatgctggaacgagaaggacatgctgcggctgaaggct
cgcaaggacgagctgacggcagagatgcgcgatctaatgaagctgaagaggaaggactca
gacctgaaacaggcagttgctaatgctcagagcgctcagacccgcctcaaatataccaaa
gcagaactggaaaatattcagaacaacatccctaaatgccaaacagagatttctcgtatg
gaaagcgaactatcaaaactggactctcagattcagatacagcaggatagtgtggaggca
aaggatgaagagatgagaagaatcagggaccagatcaaccagatggaggacacggtgttt
catgatctctgtgctgagatcggtgtggacagcatcagacagtacgaacaggagcatctg
aaacatcagacggagctcgacaggaagcggctggagtttgacaatcagtacacccgctta
aatatgcggctggagtacgaacaagaccaaatggagaggcagaagaagaagctccacata
atggagcaaaccatcaacaaggagcagagaaggatggccgagcagaaggaggatgaggag
aagctgctggcagcggtggaggacgctcaggagaaacatctggagctgaacaaccagctg
ctgtctaagaacaacctggtggccgctgccaaagctgagctggacctgaacacccggagc
ctcaaagaaatcaataaagagatggtgaagctgcagcgggaggtaatgtccgcagagacg
gccttggagcgcaagcgccttttcagacacaacatgctgctggcctgtaagatccagagt
ctgcccgttactctgctgtcggggagcctggatgagatcagcgaggtgcagctggacaca
gaatccgaaagcacctcggccaccctaagcatctacgagagagaggcacaactagtcgtc
gactactccagcctggagccagaactcaggagtctgcaggcagaggaggaggtggaggcc
ttcttggagcagctggagaagtctgtgtcctccataaagcgagtgctgtgtcacacctca
gtcccaaacatgaaagctctggccaagatgaaggacgtgaaggacaagcttgaggaagtg
accgatgcgttcaacgacagcgccaaagcagccaggaaatgcattcaggagtttgagcaa
gtcaaaggccgacgcttatggctcttcaaccggtgcttcgaacacgtctgcgtcgtgatc
gatcaaatctacaaaagaatgtgcaggaacagcagcgcccaggccatgctgagtgcagag
aacccggacgagccgtatttgggaggcatcaactaccactgcgtggcgccggggaaacgc
ttcatgtccatggacaacctgtccgggggcgaaaaggccatcgcttccctcgcactgttg
tttgccatccacagcttccgtcctgctcccttcttcatcttggacgaggtggacgctgcg
ctggacaacactaacataggaaaggtgaccagtttcatcagagaggagtctagggagaac
atgcagatcatcgtcatctccctgaagggggagtttttctccaaagccgacgctttgctg
ggagtctactcagattttaaaaattgcatgttcagccgcattgtgtccgtggacttgcgc
cgctacccgctggtggaagagaacatcgaggcacagaggaacagagggatagcgtga
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