Gasterosteus aculeatus (three-spined stickleback): 120809578
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Entry
120809578 CDS
T07457
Symbol
tgfbrap1
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1 homolog
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
120809578 (tgfbrap1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gat04131
]
120809578 (tgfbrap1)
Membrane trafficking [BR:
gat04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
120809578 (tgfbrap1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_2
Vps39_1
CNH
Clathrin
TPR-S
Prok-RING_1
Motif
Other DBs
NCBI-GeneID:
120809578
NCBI-ProteinID:
XP_040019423
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Position
II:8194635..8205193
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AA seq
875 aa
AA seq
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MSVKAFELVPAVERDLLMGDKARINIECIECCGKHLYLGTNDCFIHHFLLDEVTSSKGKL
SYSAQKLLHKYLGLKKPVAELRAASALERLIVLCDGIVFLVDMVTLETMPSGAGGGAKIR
GVTAFCVNENPVNGDPFCVEMGVLSSKRRTVQIYMVHEDRVQLVKEVTTPEQPCAVSVDG
YFLCVALATQYMILNYNTGASQDLFPYNSERRTPIVKRIGREEFLLAAPGGLGMFANAEG
VSQRAPVNWSESVIGAAVCFPYVVALDESFITIHSMLDQQLKQTLAFRDGHILQDFEGKV
ILASTKAVYILVPLPLERQIQDLLAGHRVEEALLLTEGAQQNIPKDKFQILHKRILQQAG
FIQFGQLQFLEAKEHFRKGQLDVRELISLYPLLLPASSPFTRCHPPLHEFADLNHLAQGD
QDKVLRCKKFLISYLGEVRSTETANGCREDVDTALLKLYAEQDHDSLLDLLASDNACLLA
DSVPWLEKYNKYFALGLLYRCNGQDSAALQLWIRVADGDLQDSTRSDLYEYIVDVLGSCS
SLDLVWKYADWALRKDPTVGVHIFTKRPASKELPQLNPDDVISYLGKHSQALLLYLEHLV
LERRIKKEKFHTHLAMLYLETVLSLLSMSPTDEEKICRAREMLQALLRGSNLYHAQSLLG
KMENCEHLLLERATLYGKLEEHDKALHLLVHELRDFPSAEAYCVWASSSRDSAYRQRLFH
LLLGIYLDGNPAGNPQAAAGSGDLAMAAVDLLNRHGEVFDAVRVLRMLPEGWSLQLLRPF
LGRAIRASVHASRTSQIAVGLAHSENLQLLHDRLKDCKKPIFVSEKKGCHLCHNTFSEPD
VVCLPGGVPVHTHCVAQRVRDSPTKRQLTNSSNHT
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgaaggcttttgagcttgtccccgctgtggagcgagatctcctcatgggcgac
aaggctcgcatcaacatcgagtgcatcgaatgctgtggaaaacacttgtacttgggcacc
aatgactgcttcatccaccacttcctgctggacgaggtcacttcctccaaagggaaactg
agctactctgctcagaagctgctgcacaaatatctgggccttaagaaaccagttgccgag
ctgcgcgccgcctccgctttggagcgtctcatcgtgctctgtgatggaatagtgttcctg
gtcgacatggtgactctggagaccatgccctcgggggcaggaggcggagccaagatccga
ggtgtgacggcgttctgcgtcaacgagaaccctgtaaacggcgacccgttctgtgtggaa
atgggagtgctttcctccaagcgccgtacggtgcagatctacatggtgcacgaggacaga
gtgcagctggtcaaagaggtgaccacccctgagcagccgtgtgccgtcagtgttgatggt
tacttcttgtgcgtggccctcgctacacagtacatgattctgaactacaacacgggagcc
tcccaagacctcttcccttacaacagtgagaggaggacacccattgtgaagcggatcggc
agggaggagttcctcttggcagcacctggtggtctgggaatgtttgccaatgcagaaggg
gtgtctcagcgggctccagtcaactggtcggagagcgttattggtgccgctgtgtgtttt
ccgtatgtggtcgctttggacgaaagtttcatcaccatccacagcatgttggaccaacag
ctaaaacaaacacttgcattcagggatggacacattctgcaagactttgaaggaaaggtc
attctggcttccactaaggccgtgtatatcctggtgccgctgcccctggagagacagatc
caggacctgctggccggtcacagagtggaggaggcgctcctcctcacagagggagcgcag
caaaatattcccaaagacaagttccagattttgcacaaaagaatcctgcagcaggccggt
ttcatccagtttggccaacttcagtttctagaagcaaaagaacacttcaggaagggccag
ctggacgtgcgggagttgatatctctctacccgctgctgctgccagcgtcctctccgttc
acacgctgccatcctcccctccatgagtttgcagatctcaaccacttggcacagggcgac
caggacaaagtgctgcgctgcaagaaattcctcatcagttatctgggggaggtacgaagc
acagagacggccaacgggtgcagagaggacgtggacacggcgctgctgaagctgtatgct
gaacaggatcatgacagcctcctagacctgctggcttcagacaacgcctgcctgttagca
gacagcgtcccatggctggagaaatacaacaaatattttgcacttggtctgctctatcgc
tgtaacggtcaggattccgcagcgcttcagctgtggattcgagttgcagatggggatctg
caggactccaccaggtctgacctctacgagtacattgtggacgttctcggctcctgctcc
agcctggaccttgtgtggaagtacgcagactgggccttacggaaggatcccactgtgggt
gttcacatctttaccaagaggcctgccagtaaagagcttccacagctcaaccctgatgat
gtaatctcttacctggggaagcacagccaggcgctgctcctctacctggagcacctggtg
ctagagagacggataaagaaggagaagttccacactcacttggccatgttgtacctggag
acggtcttgtccctgttgtcgatgtcaccaacagacgaagagaagatctgcagagcaaga
gagatgctccaggcgctgctcagggggtccaacctttaccatgcgcagtcgcttttgggt
aagatggagaactgtgaacatctgctgctggagcgtgccactctatatgggaagctggag
gagcacgataaagcgctgcacctattggtgcacgagctgagagacttcccgtctgccgag
gcctactgtgtgtgggcctcctccagtcgggattcggcgtaccgacagcggctattccac
ctgctattggggatttacctcgacggaaaccctgcgggaaacccgcaggctgcagcgggg
agtggagacctggcgatggcagcggtggacctcctgaatcggcacggcgaggtgtttgat
gccgtgcgcgtcctgcgcatgctgcccgagggctggtcactgcagctgctgcggcccttc
ctgggtcgggccatcagggccagtgtgcacgccagccgcacctcccagatcgccgtgggg
ctggcgcactctgaaaaccttcaactgctgcatgacaggttgaaagactgtaagaaacca
atctttgtgtcggagaagaaaggatgccacctgtgccacaacaccttcagtgagccagac
gtggtgtgtctgccaggtggagtgcctgtccacacccactgcgtggcccagagagtaaga
gactctcccacaaagagacagttaactaatagcagtaaccacacgtga
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