Gasterosteus aculeatus (three-spined stickleback): 120809630
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Entry
120809630 CDS
T07457
Name
(RefSeq) transcription intermediary factor 1-alpha-like isoform X1
KO
K08881
tripartite motif-containing protein 24 [EC:
2.3.2.27
]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
gat01001
]
120809630
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gat04121
]
120809630
Enzymes [BR:
gat01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120809630
Protein kinases [BR:
gat01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
120809630
Ubiquitin system [BR:
gat04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
120809630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ANCHR-like_BBOX
zf-B_box
zf-RING_UBOX
PHD
zf-RING_5
zf-C3HC4
CEBP_ZZ
zf-C3HC4_2
zf-RING_2
USP7_ICP0_bdg
PHD-1st_NSD
ParB
Motif
Other DBs
NCBI-GeneID:
120809630
NCBI-ProteinID:
XP_040019509
UniProt:
G3NHI6
LinkDB
All DBs
Position
XIX:complement(19758886..19768073)
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AA seq
974 aa
AA seq
DB search
MIRRREGCEMQVREDAEGTARHLVGLIEQQMDGCVDERDTARGHDAENEAESMQVREEKS
GATGQKHLDTCPVCRLNFHSREPKLLPCLHSFCKKCLPAPWRNLAAAEPLNSPRPLNVMR
CPVCRQECMEVDVMENVFVKDSVEAPSSTVERAVQLCMTCDDNTEAVGFCVDCVEYLCST
CVEAHHRVKFTKDHTIRQKAEIMHEVHGASPQRQMFCNIHKQEPLKLFCETCDLLTCRDC
QLVKHKDHNYQFLEDAYKSHKQHMENMTHQLQEKKKHIEEISNSINKGLLQVDQNRTSVH
DELKKSICSLILEINKKGKMLANQLEAVTKDHESVLRKQQEDIGYLSRHLDHVIHFTKWA
TARSGGTALLYSKRLILFQIGNLLRAKCSSSFIPQSTVRFHSRASYWASNVDLGSLVAES
VPGNQPGGFQGIPHQLSHPGPPSGSAHSFALGAPHDTLTQLQMQVDKLTPQGDWQPRPPP
PPRSWYQSVRLQPTVPGPPRGGGSPSLQPARRLTGPPPNRVSPTSSLASPEFTPQPLRGM
GGGSIYQPKAMDVFSPSPPYAHGGSSPQSRQTMEPTYVRNDPRGPVYVLKPNYPHNPPPA
LHHRSVQGEQNSPGYAAASQEEKPGTVTWKPPETQQAGGAVGSAVKKRRRSSPVPIIVIK
DEPDEDSSYVQSKQRSSLPDSTGDQPPISARGEENKGPTPLRSTGAEPHSRPPPPSSPRD
QRGGARPPAPLDDPTGGWCAACHTGGQLLCCHKCARLFHLWCHVPTLLKYPSGEWLCSLC
RDPLAPEMEYDCQDEAGTEKKEAGFSPVDKRKCEKLLLRLFCSKLSSASPGPGAPWVCAN
NWPAIKGTTNLSAVKERLEANQTPCYRSPAHFVSDIRLRLGNGSALSEVDTQVTAAGRRL
KELFEEQLGIVFPEQTFPETKLERIPAGPPDSQLLSLDNIIQRAKRQRTCSDSQDAPSRP
SGAEGTNLLNRSDI
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atgatccggaggagagaagggtgcgagatgcaggtgagagaagatgcggaggggactgcc
cgtcacctcgtaggcctcatcgagcagcagatggacggctgcgtggacgagcgggacacg
gcgcgcgggcacgatgccgagaacgaagccgagagcatgcaggtgcgagaggaaaagtcc
ggcgccaccggccaaaagcacctggacacttgccccgtttgccggctgaacttccacagt
cgggaacccaaacttctgccctgcctgcattctttctgcaagaaatgtctgcccgcgccc
tggaggaatttggccgcggcagagccgctaaactcccccagaccactgaacgtgatgcgc
tgtccggtgtgcaggcaggagtgcatggaggtagatgtgatggaaaacgtctttgtgaag
gactccgttgaggctcccagcagcacagtggagagggcagtccagctctgtatgacctgc
gacgacaacaccgaagcggtggggttttgcgtggactgtgtggagtacctgtgttccacg
tgtgtggaggcccaccacagagtcaaatttaccaaagaccacaccatcagacagaaggca
gaaatcatgcacgaggtccacggggcgtcgcctcagaggcagatgttctgcaacatccac
aaacaagagccgctgaagctgttctgtgagacctgtgacctgctgacctgccgtgactgc
caactggtgaagcacaaagaccacaattaccagttccttgaagatgcttataaaagccac
aagcagcacatggagaacatgacccatcagctgcaggagaaaaagaaacacattgaagag
atctcaaactccataaacaaaggactccttcaggttgatcagaaccgcacgtcagtccat
gatgaattaaagaaatccatctgcagtttgattctggagataaacaagaagggcaagatg
ctagctaatcaacttgaggctgtaacaaaggaccacgagagtgtcctccgaaaacaacag
gaggacatcggctatctgtccaggcacctggaccacgtcatccacttcaccaaatgggcc
acagccaggagcgggggaacggccctcctgtactctaaacgcctgattctgtttcagatt
ggaaacctcctgcgggcgaaatgtagttcctcgtttataccacagagcactgtgcgcttc
cacagtcgagcctcttactgggcgtcaaacgtcgatctgggctctttagtggcggagagt
gtgccaggcaatcagccgggtggttttcagggcatcccacatcagctctcccaccctggc
cccccctcaggttcggcccacagctttgccctgggagccccccacgacactctgactcag
ctccagatgcaggtggacaagctcaccccgcagggcgactggcagccccgaccgcctcct
ccgccccggtcgtggtaccagagtgtccggctgcagccgaccgtcccggggcccccgcga
ggaggcggctctccctccctccagccagctcgcaggcttacggggccccctcccaaccga
gtcagcccaacgagcagcctagcgagccctgagttcacgccacagcctctgagggggatg
ggcggcggctccatctaccaacccaaagccatggatgtgttctccccttcacctccgtac
gcccacggcggcagctcgccgcagtcacgacagacgatggagcctacgtacgtgaggaat
gacccacgtggtccggtctatgtgctgaaaccaaactatccccacaacccgccaccggct
ttgcaccacagaagcgtgcaaggagagcagaattcaccagggtacgctgccgcgtcccag
gaggagaaaccggggactgttacctggaaacctccagaaacacagcaggctgggggagcg
gtgggctcggctgtcaagaaaagacggagatcgtccccagtgcccatcatcgtaataaaa
gatgagccagatgaggacagcagctacgttcaaagcaaacaaagatccagcctccccgac
agcacgggggaccaaccccctatcagcgcccgcggagaggagaacaaaggcccaactcct
ctccggagcaccggcgccgaaccccacagccgccctccgcctcccagcagcccgcgggac
cagaggggaggagcccggccccccgctccgctggacgaccccactggaggctggtgtgct
gcgtgtcacactggggggcagctgctatgctgccataagtgtgccaggctttttcacctt
tggtgccatgttccaactctcctcaaatatcccagtggcgaatggctttgctctctgtgc
cgcgacccgttagcgcccgagatggagtacgactgccaggacgaagctggaactgaaaag
aaggaggcaggattttcccccgtggacaaacgaaagtgtgagaagttgctgctgcgcttg
ttttgcagcaaactaagctccgcctccccggggcccggggccccctgggtatgtgctaat
aactggccggccatcaagggaacaacgaacctctcggctgtgaaagaacgactggaggcc
aatcagactccgtgctaccgaagccctgcacactttgtatcagacatcaggctccgctta
gggaacggctcagcgctcagtgaggtcgacacgcaggtcaccgcggcaggcaggaggctt
aaggagctgtttgaagagcaactcgggatcgtcttccccgagcagacctttccagaaacc
aaacttgagaggatacctgctggccctcctgactcccagctcttgtctcttgacaatata
atccagcgtgcaaagcgccagcgcacatgctcagactcccaggacgcgccgagccgtccc
agtggagcggagggaacaaatcttctcaatcgttcggatatttga
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