Gasterosteus aculeatus (three-spined stickleback): 120810058
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Entry
120810058 CDS
T07457
Symbol
cnot10
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 10
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120810058 (cnot10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gat03019
]
120810058 (cnot10)
Messenger RNA biogenesis [BR:
gat03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120810058 (cnot10)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_12
TPR_14
TPR_16
TPR_8
ANAPC3
TetR_C_5
ARM_TT21
TPR_MalT
Motif
Other DBs
NCBI-GeneID:
120810058
NCBI-ProteinID:
XP_040020206
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Position
XX:17196774..17206880
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AA seq
734 aa
AA seq
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MAENTEQNEAKHDNSSSPGNADQEKETAASAYEAFSAGKYDESLKKLDALQELNKEDYKI
ALNKAVVEFYKSSQTTTGTLKQKLIAMKNQVHTSAEDIDGLDDVENSLLYYNQAIIHYHM
RQYSEAIAIGERLYQFLEPFERFAQAVCFLLVDLYLLTFQPEKALHLLAVLDKLSVQGSN
KNGKGESNSLNKDGPNQRAEFTARIEAAKSKMHQYKVRAYIQMKSSKACKREIKSVMNTA
GNSAPSLFLKSNFEYLRGNYRKAVKLLNSSNIAEHPGPIKTGECVRCMFWNNLGCIHFAM
GKHNLGIFYFKKALQENDHTCAQLGDGSSGQSKKFTGIPMCALLANKRYELLYNCGIQLL
HIGRPLAAFECLMEAVQVYHSNPRLWLRLAECCISANKGGSEQESKGLPCKKGIVQSIVG
QGYHRKIVLASQSTQNTVYSEGQSAAIPVASMEFAAICLRNALLLLPDHQQQDTKTENGS
KSFSLSGSTESGSENSDACSAKGQEADKFLSAAPSSPLRKQEVENLRCSILACSAYVALA
LGDNLTALNHAEKLLHQTKVSGSLKFLGHLYAAEALISLDRISDAIAHLNPENVSDVSMG
VLTSEQDQGSDKGDESVESSGKQTPLCYPSSVTSARAMMLFNLGSAYCLRSEYEKARKCL
PQAASMVNTKEIPPEAILLGVYLELQNGNTQLALQIIKRNQLLPTAVQRXSPESRKNPXQ
PVQLPSSFTQVQRK
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaaatacagagcaaaacgaggcaaagcatgacaactcctcatcccctggaaat
gcagatcaagagaaagaaacggcagccagcgcttatgaagcgttttcggccgggaagtac
gacgagtctctgaaaaagctggacgccctgcaggagctgaacaaagaggactacaagatc
gccttgaacaaagcggtcgtggagttttacaagagcagccagaccaccacggggactctg
aagcagaagctcattgcaatgaagaaccaggtccacacgtcggcggaggacatcgacggg
ttggacgacgttgaaaacagcttgctgtactataaccaagccatcatccactaccatatg
aggcagtactctgaagccatcgccataggagagcggctctaccagttcctggagccgttt
gagaggttcgctcaggccgtgtgcttcctgctggtggatctgtacctgctcaccttccag
ccggagaaggccctccacctgctggctgtgctggacaagctctccgtacagggaagcaac
aagaacggcaagggagagagcaacagtttgaacaaagacgggccgaaccagagggccgag
ttcacagccaggatcgaggcggccaagtcaaagatgcaccagtacaaagtgagagcttac
attcagatgaaatcctccaaggcctgcaaaagggagatcaaatctgtgatgaacaccgcg
gggaactccgcgccctcgctcttcctcaagagcaactttgagtacctgagaggaaactac
cgcaaagcggtgaagctgttgaacagctccaacatcgccgagcaccctggacccatcaag
acgggagaatgcgttcgatgcatgttctggaacaaccttggctgcattcactttgcgatg
gggaaacacaacctcggcattttctactttaagaaggcgctgcaagagaacgaccacacc
tgcgcacagctgggagacggcagcagcgggcaatccaagaagttcacaggcatccccatg
tgtgctctgctagccaacaagcgctacgagctgctgtacaactgtggcattcagctgctg
cacatcggcaggcctctggcggcgttcgagtgtctgatggaggccgtgcaggtttaccac
tccaaccccagactgtggctgcgactggccgagtgctgcatctctgctaacaaagggggg
tcggagcaggagagcaaaggtctaccttgtaaaaaagggatcgtccagtctattgtcggg
caggggtaccatcgcaagatcgtgctggcatcccagtcgacccagaatacagtttacagt
gagggccagtcagcggcgatccccgtagccagtatggagttcgcggccatctgcctgagg
aacgcgttgctgctcctccctgaccaccagcagcaggacactaagacagagaacggctcc
aagagcttcagtctgtctggaagtactgagagcggcagcgagaacagcgacgcctgcagt
gcgaaaggtcaggaggccgataagttcctgtctgctgctccatcgtctcctcttaggaaa
caggaagtagaaaacctcaggtgctccatcctggcgtgtagtgcctacgtggcgttggcg
ctgggagacaacctgacggctctaaaccacgctgagaagctactccatcaaaccaaggtg
tcgggatccctcaagttcctgggtcacctctatgctgctgaggccctcatctcattggac
aggatctccgacgccatcgctcacctcaacccggagaacgtcagcgacgtgtcaatgggg
gttctgaccagcgagcaagaccaagggtccgacaaaggagacgagtctgtagagtcctca
gggaagcagactcccctgtgttaccccagcagcgtgacatcagctcgggccatgatgctt
ttcaacctgggcagcgcctactgtctcaggagcgagtatgagaaggcccgcaagtgtctg
ccacaggctgcgtccatggtgaacaccaaggagatcccccccgaagccatcctgctggga
gtctacttggagctacagaacggcaacacccagctggccctgcagatcatcaaacggaac
cagctgctgcccacggcggtccagaggntctctccagaatcacgcaagaacccgntccag
cccgtccagctgccctcctccttcacacaagttcagcgcaaatga
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