Gasterosteus aculeatus (three-spined stickleback): 120810074
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Entry
120810074 CDS
T07457
Name
(RefSeq) polyadenylate-binding protein 1A
KO
K13126
polyadenylate-binding protein
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03015
mRNA surveillance pathway
gat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120810074
09123 Folding, sorting and degradation
03018 RNA degradation
120810074
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gat03019
]
120810074
03041 Spliceosome [BR:
gat03041
]
120810074
Messenger RNA biogenesis [BR:
gat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
120810074
mRNA cycle factors
Stress granule specific factors
120810074
Spliceosome [BR:
gat03041
]
Complex C
Other components
Complex C specific factors
120810074
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_3
RRM_occluded
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
120810074
NCBI-ProteinID:
XP_040020231
LinkDB
All DBs
Position
20:18159104..18164051
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AA seq
635 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAREFTNVYIKNFGEDMDDEKLREMFNKYGPALSIRVMTDESGKSKGFGFVSFER
HEDAQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMATVRAVPNPVLNPYQPAPPSGYFMAAIPQAQNRA
AYYSANQLAQLRPSPRWATQGVRPQHFQNMPNAMRPSAPRPQAFNTIRPTTTPNAQVPRM
MASQRMPTQALGQRPTGASATAAPVRAMPQYKYAAGVRNPQQHMASQPQVNMQQPAVHVQ
GQEPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKSTTPAGVPSV
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccagcgcgcccagctacccaatggcttccctctatgtgggggacctgcatcca
gacgttaccgaggccatgctctacgagaaattcagcccggctgggcccatcctctccatc
agggtgtgcagagacatgatcacccgccgatccctcggctatgcctatgtcaacttccaa
cagcccgctgacgctgagcgagccctggacaccatgaacttcgatgtgatcaaaggcagg
ccccttcgcattatgtggtctcagcgggacccctccctgaggaagagtggggttggcaac
atcttcatcaagaacctggacaagtccattgataacaaagccctctacgacaccttctct
gcatttggaaacatcctgtcctgcaaggtggtttgtgatgaaaatggctcaaaaggttac
ggctttgtgcactttgagacccacgaggctgctgagcgcgccattgagaaaatgaatggc
atgttgctcaatgacagaaaagtatttgttggacgcttcaagtctcgcaaagagagggag
gctgagcttggggcacgcgccagagagttcaccaatgtttacatcaagaactttggggag
gacatggatgacgagaagctcagggagatgttcaataaatatggacctgcccttagcatc
cgggttatgactgatgagagtggcaaatcaaagggatttggcttcgtcagcttcgagaga
cacgaggatgcacaaaaggctgtggacgacatgaacggcaaagaacttaatggcagacaa
gtgtatgtgggccgcgcacaaaagaaaggagagcggcagaatgagctcaagcgtaaattt
gagcagatgaaacaggatcgtatgaccagataccagggtgtcaatctgtatgtgaaaaat
ctggatgatggcctggacgacgagcgcctacgtaaagaattctctccattcggaaccata
actagcgctaaggtgatgatggaggggggccgcagcaaaggctttggctttgtgtgtttc
tcttccccagaggaggcaacaaaggccgttacagaaatgaacggacgcattgttgccaca
aagccactgtatgtggccctggcccagcgtaaggaggagcgtcaagcccatctaacaaac
cagtacatgcagaggatggccacagttcgtgctgtgcccaaccctgtcctcaacccatat
cagcccgcccccccctcgggctacttcatggcggctatacctcaggcccagaaccgtgcc
gcatactactccgccaaccagctggcgcagctccgccccagcccccgttgggccactcaa
ggagtgcgtcctcaacacttccagaacatgcccaatgccatgcgcccatcagctcccaga
ccccaggccttcaacaccatccgtcccaccaccacccctaacgcccaggtcccacgcatg
atggcgtctcagcgcatgcccacccaggccctgggccagcgccccacaggtgcatcagcc
actgccgccccagtgcgagccatgccccagtacaagtatgccgctggtgtgcgcaaccct
cagcagcacatggcgtcccagccacaggtcaacatgcagcagcctgctgtccatgtccaa
ggacaagagcccctgacagcctccatgctggctgctgcccctcctcaggaacagaagcag
atgctgggtgagcgtctgttccccctgatccagaacatgcaccccagcctggctggcaag
atcactggtatgctgctggaaattgacaactctgaacttctccacatgctcgagtccccg
gagtcgctgcgctcaaaggtggatgaggctgttgctgtgctccaggcccaccaggctaag
gaggctgctcagaagtccaccacccctgctggggttcccagcgtctaa
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