Gasterosteus aculeatus (three-spined stickleback): 120810203
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Entry
120810203 CDS
T07457
Symbol
smg5
Name
(RefSeq) protein SMG5
KO
K11125
protein SMG5
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120810203 (smg5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gat03019
]
120810203 (smg5)
03032 DNA replication proteins [BR:
gat03032
]
120810203 (smg5)
Messenger RNA biogenesis [BR:
gat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
120810203 (smg5)
mRNA cycle factors
Common to processing body (P body) and stress granule
120810203 (smg5)
DNA replication proteins [BR:
gat03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
120810203 (smg5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
120810203
NCBI-ProteinID:
XP_040020493
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Position
XX:complement(3875852..3888864)
Genome browser
AA seq
1120 aa
AA seq
DB search
MSGPVQDSEPEAKVLLIKRLYRAVVESVHKLDVIIGSKASYREVFKPENISLRNKLRELC
VKLMFLHPVDYGRKAEELLWRKVYYEVIQVIKTNKKHIHSRSALECAYRTHLIAGVGFYQ
HLLLYIQSHYQLELQDCIDWTHVTDPLIGRKKPVSATPKEMEWAQMACHRCLVYLGDLAR
YQNELAGVEAEQLAERFYHQALSVMPHVGMPFNQLGTLAGSKSYNVEATYYYLRCIQSEA
PFEGAYGNLKRLFDKAAKMYQQVKKQEMKKLSPSRQRLKDIKHLLVSFMYLQSLLQPKNS
LMETELTSLCQSVLEDFNLVMFYLPPPTHGAAHQCPSEEEDEQQPQHADSSCPVLPDTLV
FKMVVTCLMVVHSLKRGGSKQYSASIAFTLALFSHLVNHVNIRLQAELEEAESQVPRLHT
DVTDDPEVRDASAAPADRSAEKPLQNGSLEREDEEERKDDAKKQCSAEERRRLEEEKQRQ
KKKYTRLSRLRRRRCARKDTGGEDESDLSEGFESEEEEDVDERRDHTESTGAADGTPVNP
PAVRKETKRDPLGEEGSWGTGSEEEEEEEEEEEEEGGTAFDVETDSDMNSQESRSDLEDI
EDAESSDNLEGQAREHRDDEDQPKGEVGERDGCSPLTTNGPLTPSDSSISSNLQAMSSQL
FQAKRCFRLAPTFSNMLLRPQASSSSGVAAPAEASAPPSQETPPPAEDSPRDANPGAANG
TNENDLDSDSEGSQHSAQSVHSEKTLLEKLEILTNQGLIQVVKVFVDWLRTNTDIILMCA
QSSQSLWNRLSVLLNLLPDGGKMLEAELGLNAEVTELLNECEQPGLVQSLLLPEDVALRH
LPALNVAHRRLDFTHRNSSLSSLQECVVRVCCIRSFGHFLTNLQGNVLHFNPEAGIFTSI
NQSEQDNLVQQAKAQFRMAEEEARRNRLMKDMAQLRLQLEVSQLEGSLQQPKAQSSMSPY
LVPDTAALCQHLHLIRQLAASGCFIIIIPRTVIDGLDRLKKENAGARDGIRFLESEFRKG
NRYIRCQKESGRGFERDKLKRQDMEAWHLYKMVDSCRQLTVSQSNGDEDTAGMVTILTDH
QVEELCTRSAAMKAAVQAAGSAGMELKNIVDFYRQWKEIG
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagtggaccggtacaggacagtgagccagaggcgaaagtccttctcatcaagcggctt
tacagggccgtggtggagtctgtgcacaagctcgatgtcatcatcggcagcaaagcatcc
tacagagaggtcttcaagccggagaacatcagccttcgcaacaaactgagggagctttgt
gtgaagctgatgttcctccacccagtagactacggccgtaaggccgaggagctgctctgg
aggaaggtttactatgaggtcatccaggttatcaagaccaacaagaagcacatccacagt
cgcagcgctctggagtgcgcctaccgcacacacctgattgccggcgtgggtttctaccag
cacctgctgctgtacatccagtcacattaccagctggagctgcaggactgcatcgactgg
acccacgtcacagacccgctgataggccgaaagaaaccagtgtcggccacccccaaggag
atggagtgggcacagatggcctgtcatcgctgtctggtctaccttggagatctagcccgt
tatcagaatgaacttgctggagtggaggccgagcagctggcagaaaggttctatcaccag
gcgctgtctgtcatgccacatgttggaatgccgtttaaccaactgggcacactcgcaggg
agcaagtcctacaatgttgaagcaacctactactaccttcgctgcatccaatcagaagcc
ccctttgagggcgcctacggcaacctgaagcgcctgtttgacaaagctgccaagatgtac
cagcaggtgaagaagcaggaaatgaagaagctttctccctctcgacagagattaaaagac
attaagcacctcctggtgagcttcatgtaccttcagagcctgctgcagcccaagaacagt
ctgatggagacggagctgacgtccctttgccagtcggtgctggaggacttcaacctggtg
atgttctacctgccgccgccaacgcacggcgccgctcaccagtgccccagcgaggaagag
gacgagcagcagccgcagcacgccgacagctcgtgccccgtgctgccggacacgctggtc
ttcaagatggtggtcacctgcctgatggtggtgcacagcctgaagaggggaggatcaaag
cagtacagtgcgtccatagcgttcaccctggcgctgttctcccatctggtgaaccatgtc
aacatccgactgcaggctgagctggaggaagcggagagccaggtgcctcggcttcacact
gacgtcacagatgaccccgaggtgagggacgcgtcggctgcaccggcggatcgctccgcc
gagaagcctctgcagaacggctctctggagcgagaggacgaggaggagcggaaggacgac
gccaagaagcaatgcagtgcggaggaacggcgccggttggaagaggagaagcagaggcag
aagaagaagtacacccgcctctcccgcctgcgccggcgccgctgcgcccgcaaggacacc
ggaggggaggacgagagcgacctgagcgaaggcttcgagagcgaagaggaggaggacgtc
gacgagaggagggaccacaccgagtcgacgggggccgccgacgggaccccggtcaatccg
ccggctgtcaggaaggagactaagcgagaccccctgggagaggagggcagctgggggacc
ggctcagaggaagaggaggaggaggaggaggaggaagaggaggaaggaggaaccgcgttt
gacgtggagaccgactcggacatgaacagccaggagtcccgctcggacctggaggacatc
gaagacgcggagagctccgacaacttggagggtcaggcgcgggagcaccgggacgacgag
gaccaaccgaagggggaagtgggcgagagggacggctgctcgccgctgaccaccaacggg
ccgctcacgcccagcgactccagcatcagcagcaacctgcaggccatgtcctcgcagctc
ttccaggccaagcgctgcttccgcctggcgcccaccttcagcaacatgttgctgaggcct
caggcctcgtcgtcgtcgggtgtcgccgcccccgccgaggcctctgctcccccgtcccaa
gagacgccccctcctgctgaggattcgccccgcgatgccaaccccggtgctgccaacgga
accaacgaaaacgacttggactctgattcggaaggcagccagcacagtgctcagtcggta
cacagcgagaaaaccctcttggagaagctggagatcctgaccaatcagggcttgatccag
gtggtgaaagtctttgtcgattggctgaggacaaacacagacatcatcctcatgtgtgcg
cagagttctcaaagcctgtggaaccgactgtcggtgttgctcaacctgcttccagatggc
ggcaagatgctcgaggctgagctcggcctgaacgcggaggtgacggagctgttgaacgag
tgcgagcagcccggtctggtccagagcctgctgctgcctgaagacgtggctctgcgacac
ctgcccgctctcaacgtagctcaccgccgcctcgatttcactcaccgcaactcctccctc
agctcgctacaggagtgtgtcgtgcgagtgtgttgcattcgcagttttggccacttcctg
acgaatctccagggcaacgtgctgcacttcaacccggaggcgggcatcttcaccagcatc
aaccaatccgaacaggataatctggtgcagcaggccaaggcccagttccggatggctgaa
gaggaggctcgtcggaatcgcctaatgaaggacatggcgcagcttcgactgcagttggag
gtgtcgcagctagagggcagccttcagcagcccaaggcccagtcctccatgtctccctac
ctggtgccagacacagccgctctgtgccagcatctccacctcatccggcagctggccgcc
agcggctgcttcatcatcatcatcccacggaccgtgatcgatggacttgacaggttgaag
aaggaaaatgccggcgcgagggacggcatccgcttcctggagtctgagtttcgcaaaggc
aacaggtacattcgctgccagaaggagtctggtcgaggttttgaaagagataagctgaaa
cgtcaggacatggaagcctggcatttatacaagatggtggacagctgtcgtcagcttacg
gtctcccagagcaacggggacgaagacacagccggcatggtgaccattctcaccgaccac
caggtggaggagctttgcactcggtcagcagcgatgaaggcggcggtccaggcggcgggc
tcggcgggcatggagctgaagaacatcgtggacttctaccggcagtggaaggagatcggc
tga
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