Gasterosteus aculeatus (three-spined stickleback): 120810620
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Entry
120810620 CDS
T07457
Symbol
ddx61
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6 isoform X1
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120810620 (ddx61)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gat03019
]
120810620 (ddx61)
03036 Chromosome and associated proteins [BR:
gat03036
]
120810620 (ddx61)
Enzymes [BR:
gat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120810620 (ddx61)
Messenger RNA biogenesis [BR:
gat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
120810620 (ddx61)
mRNA degradation factors
5'-3' decay
Decapping complex
120810620 (ddx61)
Chromosome and associated proteins [BR:
gat03036
]
Eukaryotic type
Gene silencing
piRNA pathway
120810620 (ddx61)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
120810620
NCBI-ProteinID:
XP_040021274
UniProt:
A0AAQ4QW23
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All DBs
Position
XX:1407951..1415473
Genome browser
AA seq
529 aa
AA seq
DB search
MFKLGTWTDKSKILKELKKKIPDHQYSEDKRIPSNTCEGKEFMFSSPMATARTANPAPMM
GLNKPANGQLRGQTGLLAAGQQPNALQKMTSAPHSSGGIKFGDDWKKCLELPPRDTRMRT
SDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPVQEESIPIALSGRDILARAKNGTGKS
GAYLIPLLERIDLKKDHIQAIVMVPTRELALQMSQISIQLSKHLGGVKVMATTGGTNLRD
DIMRLDETVHVVIATPGRILDLIKKGVAKMDKAQLIVMDEADKLLSQDFVVLIEDIISFM
PKDRQILLYSATFPISVQKFMSKHLKKPYEINLMEELTLKGITQYYAYVTERQKVHCLNT
LFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKMMQEYRNRVFHDFRNGLCRN
LVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITSEDRYNLK
NIEDQLVTDIKPIPSSIDKSLYVAEFHSVDPDAEDHDEAGAKSKELGAI
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgtttaaacttggcacttggacggataaatccaagatactcaaagaactcaaaaagaaa
attccggatcatcagtacagcgaggataagcgtattccttcaaatacctgtgaaggaaag
gagtttatgtttagttcacccatggcgacagcaaggacggcgaacccagcacccatgatg
ggattgaacaaaccagcaaacgggcagctccgaggccagacggggctcctcgccgccggc
caacagcccaacgccctccagaaaatgaccagcgcccctcacagcagtgggggcatcaag
tttggtgatgattggaagaagtgcctggagcttcctccaagagacacccggatgagaact
tcggatgtgacatcgaccaagggaaatgaatttgaagactactgcctaaagcgggagctg
cttatgggtatctttgaaatgggatgggagaaaccgtcccctgtccaggaggaaagcatc
cccatcgcgctgtcgggcagagatattttggctcgggccaagaatggcacaggaaagagt
ggagcctacctcatccccctcctggagaggatagacctgaagaaggatcacatccaggcc
atagtcatggtgccaacaagggagttggccctgcagatgagccagatcagcattcagctc
agcaagcacctcgggggtgtcaaggtcatggctaccacgggcggcaccaatttgagggat
gacatcatgcgtcttgacgagacagtgcatgtagtgatcgctacaccaggcaggatactg
gacctcatcaagaagggtgtggctaaaatggataaagcccaattgattgtgatggacgag
gcagataagctgctctcccaggactttgtggttctgattgaagatataatcagcttcatg
ccaaaggatcgtcagattctgctttactcggccactttccccatcagtgtgcagaaattc
atgagcaagcatctgaagaagccgtatgagatcaacctgatggaggagctgaccttgaag
ggcatcactcagtactacgcctacgtgactgagagacaaaaggtccactgtctcaacacg
ctgttttcgaggcttcaaatcaatcagtccatcatcttttgtaactcgacccagagggtt
gaacttctggccaagaaaatcacccagctgggttattcgtgcttctacattcatgcgaag
atgatgcaggaatacaggaaccgtgtgttccatgacttcaggaatggattgtgcagaaac
ctggtctgcacagacctgttcactcggggaattgacatccaggcagtaaatgtggttatc
aactttgacttccccaaaaatgcagagacctacctgcaccgcattggacgatcagggcgt
tttggtcatctgggtctggctatcaacctgataacttcagaagatcgctacaacctgaag
aacattgaggatcaactggtcactgacattaagcccatccccagtagcattgacaagagc
ctgtatgtggccgagtttcactctgttgacccagatgcagaggaccacgacgaagctggc
gcaaaaagcaaggaactgggagcgatctga
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