Gasterosteus aculeatus (three-spined stickleback): 120811091
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Entry
120811091 CDS
T07457
Symbol
prdm1a
Name
(RefSeq) PR domain zinc finger protein 1a
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gat03000
]
120811091 (prdm1a)
Transcription factors [BR:
gat03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
120811091 (prdm1a)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
SET
zf-C2H2_4
Zf-C2H2_ZNF451_C
C2CH-3rd_BIRD-IDD
zf-C2H2_6
zf-C2H2_jaz
zf-met
zf-C2HE
B129_C2H2-zf
Motif
Other DBs
NCBI-GeneID:
120811091
NCBI-ProteinID:
XP_040022184
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Position
XX:complement(1094767..1106984)
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AA seq
832 aa
AA seq
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MCGWDQSSTATSHSSAMLTSEGAHAMEQDDAHRGFKMVSAAAAATTTSSGADVEMEEADM
TRWTEAEFEEKCTYVVKDTAWEAESDRGRATRAEASLPRNLAFKHPADSKEVVGVCSREY
IPKGTRFGPLVGETYTADSVPKDANRKYFWRIYEDQDFRHFVDGLDETRSNWMRYVNPAH
SAAEQNLAACQNGAEVFFYTVKPVPAGAELLVWYCHDFARRLHYPPSGELMMQKLKQSLL
EVKQQQVTSGERSVVASSPSPVAATPTPPPKREHSVLSILRGTTSSSSSSCSPAKREPSR
PLPTRLHCADSPERPLYPRALYPAPRPHPHIPQDFLGGHKPGQLGYPATRSPGNQSSTTP
SPSARSSPESSPQGSPSGPASFYPAGLGSYPGYSPPPTPLSSSFYPPGAPYSRYLLPHHY
PLPGGGVPTVGGIFPRMYPLYSSLLPPHVPLLHSDTAGRRFLMPDHVHPASISAHRDFLL
PRPTSAFQAATSLKDKAAPHHPYPGHPPPHRSAHAPASGSPTAGAAPPNERVPTKPTSAL
LGNGGEHCSDDEAINLSKAKRGPGSAGYKALPYPLKKQNGKIKYECNVCSKTFGQLSNLK
VHLRVHSGERPFKCQTCNKGFTQLAHLQKHFLVHTGEKPHECQVCHKRFSSTSNLKTHLR
LHSGEKPYHCKLCPAKFTQFVHLKLHKRLHSRERPHKCPHCHRHYVHLCSLRLHLKGYCP
AASGQTASEELQRANEEIERFDVSEHAEQLEQLQGGAEVEAVLEKQVLGLLWREPDLKAS
RFRGHHKGADLLSADYGAYKSPSETSVIKMRHGGVLSLPANVTVKQESDDHA
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atgtgcggatgggaccagagttccacggcgacctctcatagctcggccatgttgaccagt
gagggggcgcacgccatggagcaggacgacgcacaccgcgggttcaagatggtctccgcc
gccgccgccgccaccaccaccagctcgggggccgacgtggagatggaggaggcggacatg
acgcggtggacggaggcggagtttgaggagaagtgcacctacgtcgtcaaagacacggcg
tgggaggcggagtcagatcgcgggagggcgaccagggccgaggcgtcgctgccccggaac
ctcgccttcaaacacccggccgacagcaaggaggtggtcggcgtgtgcagcagggagtac
atccccaaaggaactcgcttcggccccctggtgggtgagacctacaccgccgacagcgtt
cccaaggacgccaaccgcaagtacttctggaggatctacgaggaccaggacttccgccac
ttcgtggacggcctggacgagactcgctccaactggatgcgctacgtcaacccggcccac
tcggcggccgagcagaacctcgccgcgtgccagaacggcgccgaggtcttcttctacacg
gtgaagcccgtccccgccggcgccgagctgctcgtctggtactgccacgacttcgcccgc
cgcctccactacccgccgtccggagagctgatgatgcagaaactcaagcagtctctcctg
gaggtcaagcagcagcaggtgaccagcggggagcgctcggtggtggcctccagcccctcc
cccgtcgcggcgacccccacgccgccgccgaagagggagcacagcgtcctctccattctc
cgcggcaccacctcctcctcctcctcctcctgctcgccggctaagagggagcccagccga
ccgctcccgacccgcctgcactgcgccgacagccccgagcggcccctgtacccccgcgcc
ctctacccggccccccggcctcaccctcacatcccccaggacttcctcggcggccacaag
cccggccagctcggttaccccgcaacccgttcccccggcaaccagtcctccaccacgccc
agcccgtcggcacggagcagcccggagagcagcccccaggggagcccctcgggcccagcc
tccttctaccccgccggactgggttcttaccccggttactccccgccacccacccccctg
tcctcatccttctaccctccgggcgccccttactcacgctacctccttccccatcactac
cctctccctggcgggggcgtccccaccgtgggaggaatctttcccaggatgtaccccctg
tacagcagcctcctgcccccccacgtgcccctcctgcactccgacacggccgggaggcgc
ttcctgatgcccgaccacgtccaccccgcctccatctcggcccacagagatttcctcctg
ccccgccccaccagtgccttccaggcggccacctccctcaaggacaaagcggcgcctcac
cacccgtacccgggccaccctcccccgcacaggtctgcccacgcgcccgccagcggctcc
ccgacggcgggcgcggcgccgcccaacgagcgggtgcccaccaagcctacctcggccctg
ctgggcaacggcggcgagcattgctccgacgacgaggccatcaacctgagcaaggcgaag
cgcggccccggctcggcgggctacaaggcgctgccgtacccgctgaagaagcagaacggc
aaaatcaagtacgagtgcaacgtgtgcagcaagaccttcggccagctgtccaacctgaag
gttcatcttcgagtccacagcggagagagacccttcaaatgtcagacctgtaacaagggc
ttcacccagctggcgcacctgcagaaacacttcctggtccacacgggggagaagccccac
gaatgccaggtgtgtcacaagcgcttcagcagcaccagcaacctgaagactcacctgcgc
ctccactcgggggagaagccctaccactgcaagctctgcccggccaagttcacgcagttc
gtccacctcaagctgcacaagcgcctccactcccgcgagcgcccgcacaagtgcccccac
tgccaccgccactacgtccacctgtgcagcctgcggctccacctgaagggctactgcccg
gccgcctccggccagaccgcctcggaggagctgcagcgcgccaacgaggagatcgagcgc
ttcgacgtcagcgagcacgccgagcagctggagcagctgcaggggggcgcggaggtggag
gccgtgctggagaagcaggtcttgggtctgctttggagggagccggacctcaaggcctcc
cgcttccgcggccaccacaagggcgccgacctcctgtcggcggattacggcgcgtacaag
tcgccgagcgagacgtcggtcatcaagatgcggcacggcggcgtcctgtcgcttcctgcc
aacgtcaccgtcaagcaggagtcggatgaccacgcgtga
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