Gasterosteus aculeatus (three-spined stickleback): 120811314
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Entry
120811314 CDS
T07457
Symbol
rttn
Name
(RefSeq) LOW QUALITY PROTEIN: rotatin
KO
K16484
rotatin
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
gat03037
]
120811314 (rttn)
Cilium and associated proteins [BR:
gat03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
120811314 (rttn)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RTTN_N
TPR_Trm732_C
Motif
Other DBs
NCBI-GeneID:
120811314
NCBI-ProteinID:
XP_040022475
LinkDB
All DBs
Position
21:10527659..10554262
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AA seq
2251 aa
AA seq
DB search
MSAAQLAPTRLESHGFHTVNMELSPIIKKIGHSLLEIRVRALKNIISKLDHSLISVSDIV
QEKMLFVHLLQWFNFPEVAMQEEVLELLSTLSKHPSAAQMLRDVGAVDFLTQLSPNVEPR
LRAVIDGTLDQLFQLPELLPSHIMVSSRGRRSTTPTDVPPEDPFPKTGYFHKTTLSHADV
PAQKIAVHESVRCLKFSVFPWLTLTNTDRHILSSNESSLRSSNPNLVRTTCELLCDVIMQ
DFPAEIFLQRPSIVQNLLSLLKLGSGRGEAGFLHLYALSCLRQLCVGLRRRLRFHHDPSF
YSMKQDPVSQNSSFSYSREVRATQRSQASSPAAECCPRPSVVGRTSQRASGDGQDGDAAS
TSGSSNRGGASVQRQAAQSPADVAQLELPDLGAEDVLELQLQQLTLAQFTVATMTHAIPL
LKTEGLHTLHRVMELLCDAVHLLGDSVHELVWDDRSLVGTELKEKLQACMELLGGILSFY
QSYSTDIPASSQVHHRIAYTVIAVFTVKLLQTILPPEKASDNLPENTATAVFHMCLDPSL
GSLLPSVQDAAVAYLEQVNSDSHDLYRRVTRAALWMESTCNFLKETQAEGEKNWLEILEL
ADQAINGLPFHQHLHVVKECVHMCSYLWKFNQPSPFLQTESQKLLLKLLSHPSLPVKMET
YKHTLNLVKDCLGIHNASRQESAACGGINFLTHHRVLYEMCAFGLQDSAETVNVAAKDIL
LFLLKGRLMMTASTWDRFIEALHPVMPILQGYASTEESLGNCVLLISDMSDVARDDVFPS
RAKLKAALRLLFTRQPTVRIAAVQQILPHLTSDNDASKARPDLDQAAVSSLPNLFCLRNP
LDITLDTSNKFVLKVESVEKLFCILSSDTVDVSLRRSAAEQLSVVLQDTAMHPVLKNLGI
TDKVVFFITGSVNGDESLDCLLESCVCILRKLAYADPSLRHSLAQRNLLLLTLLRASLIL
KENKGNGNEIAVLMSLLLFDEIASIKIWSDSSNADATLTPFSLPLSVMRRYNIPFQAATH
HAVSPYCCVLPPSSDLLTLAPARLALQVAWNTAWHSGMDNLLEELHDTSFSATEFHPELK
LSEAQVILLQAMHLPTALQGCIKAIATAAGHSSVTSALSRLSLYLLIDQLAHPHIPTHRC
IDTLHSLSWQAAVTRFLQVLPAGVEDERLLVGIVAFLNAYFKPMHTESASDPEDKDLCWM
LQLLLNQETASILNLLLGVETQASTQSPVGPEEEKNHVSQRLQKELTSFFNTLLLRLTQT
ADRLSLALAGPFKSQLAVRLLQSLRVSDAPRFYGLPSLERTLQGMVRLTARPGWSSHCSD
LEPALLCSKYLSGLLEVISSFYVEWGGNSMSFMGKGVTKSAVICLLHLSHEMRARDEDFI
SQWSLGNNEVAAEEAGALQLGLAWLIPLWVDRDQEVRFASLGLGAALSAVPSGCRALCAS
CQNISGGLWGTLLNILLDQQESSMVRREAAFILQNLMVMPMPANAEKAKDSHWQHPCVHD
EVSGVSLVGLPALQALLYHCQYFQHVALSASKCYLGRYTFNLQPCAATTGGPHPQEGNSL
NSENSLWLWRCDAPTTNSSRPSSSLSTSSTVTRGSGPDSPKGPSPSSTVKDNPVSRLMTQ
GQSDTDASDSLTSQDSRQGETPPLELVVMVTADLMTAHCGLLANLLAILPDFTLAAVRHN
QLLRALASLLDIGLIEKCLTELKTPSILTWEREDIKIQFVTLLQFLSSFSKLLRSCVLVS
KELIGQMDFLRRLLTSLVAVLMLDTKGLDAGTRDVVCVCWADVFMLLATLVRRDISAAYP
SVSAALGRRWRTFAGTLSVCVNEKWTDPLLHTVALQFLSTIFTAETDSRGAEVQTSNSKP
ATALSDIVNGPSASELCELLLQRTLQDPLRRRXGAALMALLASSPSAQKHAAKAGLIDSC
VEQMKQTHSQLHLESVRPGKASHRRKEEGYLKEVKLTVEILRNALYRNDECKVVATDARL
TLALYALWPWLLLDDPTMEAVLELLCVYTANCPGACSCVGGAGSGAAPGSKGTPSTSLMH
SVMRLASGVAPDNCSVQKLSFCLLANLAMSRDCRCLLQKNNFLQAFPSVPMPKPGGAKVA
AVSGGPLGLWLRLLVSVSCAEDGQLSIFRVTGALELLADLAPHRRHALLTLHNLCFCPAS
KQHVVANDKATKALLCCLSSKEMETRSMAASALWALLHNNQRAKTTLKCPSIRLRIEEAR
AISRKEAENKQDPTSTYLLKCLENLSHLLNN
NT seq
6756 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcggcacaactggcacccacccgacttgaaagccacggcttccacaccgtgaac
atggagttatcccccattatcaagaaaataggtcactctttgttggagataagagttcgc
gcattgaagaacatcatttctaagctggaccattcgctgatttccgtctctgacatcgtc
caagagaagatgcttttcgtgcatctcctccaatggttcaatttccccgaggtggcgatg
caggaggaggtcctcgagctgctttccaccctgtcaaagcatcctagcgcagcccagatg
ctgagagacgtcggggcggtggacttcctcactcaactgtctccgaatgtggaacccaga
ctgcgagctgtcatcgacggaaccctggaccagctgttccagctacccgagctactccct
agtcacattatggtctcctcgcgtggacgccgctctactactccaacagatgtgccacct
gaagatccttttcctaaaacggggtatttccacaagacaacgctgagccacgcggacgta
ccagcacagaagatagcagtgcatgagtcagtgagatgtctcaagttttctgtgtttcca
tggcttaccttgacaaacacagacagacacatactttcatctaacgagagttctcttagg
agcagcaaccccaacttggtgcggaccacatgtgaacttctgtgtgacgtcataatgcaa
gattttcctgccgagatcttcctgcaaagaccaagtattgtacagaacctgctgtccctg
ttgaagctgggttcaggtagaggtgaggccggcttcctccacttgtacgcgctttcctgc
cttcggcagctctgtgtggggctgcgcagaagactacgctttcatcacgatccaagcttt
tactccatgaagcaagatcctgtgtcccagaactcgtccttttcctactcccgggaagtg
cgcgcgacccaacgctcgcaggcctcgtctccggcggcggagtgctgtcctcggccgtct
gttgtaggacgcacaagccagagagccagtggagacggccaagacggagatgcagcttcc
accagtggcagttcgaaccgagggggagcatcggtccagaggcaggcggcccagtctcct
gcagatgtggcccagctggagcttcccgacctgggggcagaagatgtcctcgagttgcag
ttacagcagctcactttggctcagttcactgttgccaccatgacacatgccatcccactg
cttaaaacagagggtttgcatacgctccatcgcgttatggaactgctgtgtgacgccgtc
cacctgctcggggacagtgttcacgagctggtctgggacgatcgcagcctggtggggacg
gagctgaaagaaaagctgcaagcctgcatggaattattgggcgggatcctcagcttttat
cagagctactcgacagatattcccgccagctctcaggttcaccacagaatcgcgtacact
gtcattgctgtgttcaccgttaaactccttcagaccatcctccctcccgagaaggccagt
gacaatctcccagaaaacacagcaacagcggttttccacatgtgcttggacccttcgttg
gggagtttgttacccagcgtgcaagacgccgccgtggcctacttggagcaggtgaactca
gacagccatgacctctacaggagggtgacccgcgcggccctttggatggaatccacctgt
aacttcctcaaggaaacgcaagctgagggggaaaagaactggttggagatcctggagctg
gcagaccaagccatcaacgggctcccgtttcaccagcacttacacgttgtcaaggagtgt
gttcacatgtgctcttacctgtggaagttcaatcagcccagtccattcctccaaacagag
agccagaaacttctcctcaagctgctgtcccatccgtcactgcctgtcaagatggaaaca
tacaaacacactttaaacctggtcaaggactgccttggcattcacaatgcatcccgacag
gaatcagcagcctgcggtggaatcaactttctcacccaccacagggtgctctatgaaatg
tgtgcttttggactccaggattctgcagagacggtgaacgttgctgccaaggatatcctg
ctcttcctgctcaaagggcgattgatgatgacagcatcgacctgggacagattcattgag
gcacttcacccggtcatgcccatattacagggttatgccagcactgaggaatccctggga
aactgcgtcctactgataagtgacatgtcggacgtggcgagagatgacgtgtttccgagc
agagccaagctaaaggcagccctccgacttctttttaccagacagcccaccgtgagaata
gcagcagtgcaacaaatcctgccccacttaaccagcgacaatgatgccagcaaagccaga
ccggaccttgaccaagcggcagtctcctcgctgcccaatctcttctgcctcagaaaccct
ttggacatcacgctggacaccagcaacaagtttgttctcaaggtggagtcggtggagaag
ctgttttgtatcctgtcctcggacaccgttgacgtctctctgagaagatctgctgccgag
cagctgtctgtggttcttcaagacacagcaatgcacccagtgctgaagaatctcggaata
acagacaaagtagtttttttcatcacagggagtgtaaacggcgacgagagcttggattgc
ctgctggagtcgtgcgtgtgtatcctgaggaagttggcttatgctgatccatctctgagg
cacagtctggcacaacgcaacctcctgctcctcacactgctcagggcctcgttgatatta
aaggagaacaaaggcaatggaaatgagatcgccgtcctgatgagtttgctgctatttgac
gagattgccagcattaagatatggtcggattcatccaatgcagatgcgaccctcacaccg
ttctccctgccactgtcagtaatgcgcaggtacaacatcccattccaggcagcgactcat
cacgccgtcagcccgtactgctgcgtcctgcccccgtcctctgacctcctgactctggcc
cctgcccgcctagccctgcaggtcgcctggaacactgcatggcactctgggatggacaac
ctcctcgaagagctgcatgacacctctttcagtgccactgaatttcatcctgagttaaag
ctgtcagaagcacaagttatattgctgcaggccatgcatcttcccactgcgctgcagggc
tgcatcaaggccatcgccacagcagcaggccacagctcggtgacttccgccctctccagg
ctgagcctctatctactgattgatcaactggcccaccctcacatccccacccaccgctgc
atagacacccttcactcgctcagttggcaggcagcagtgacaaggtttcttcaggtgctt
ccagccggtgttgaagatgagaggttgctagtgggcatcgttgcctttttgaatgcctac
ttcaaaccgatgcacacagagtctgcatcggacccagaagacaaggacctatgctggatg
ctgcagctgcttctcaatcaggagacggcatccattctcaatctgctgctcggtgtggag
acccaggcctcaactcagagcccagtagggccggaggaagagaagaaccacgtgagccag
agactgcagaaagaactcaccagcttctttaacaccttactgctccgactcacgcagacc
gcggacaggctgtctctggcattagccggccctttcaagagccagctggcagtccgtttg
ctgcagagcctgagggtctccgacgccccacgtttctacggccttcccagcctggagaga
acactgcagggcatggtccgcctgacggctcggcccggctggagctcccactgctctgac
ctggaacccgccttgctctgctccaagtatctcagcgggctattagaggtgatctcatca
ttttatgtagagtggggaggcaactcaatgtccttcatggggaaaggtgtgaccaagagc
gccgtcatctgcttgcttcacctgtcccacgagatgagggcccgtgacgaggacttcata
tcccaatggtctttggggaataacgaggtggctgccgaggaggccggcgccttgcagctc
ggtttggcctggctcatccccctgtgggtcgaccgcgatcaagaggtgaggtttgccagt
ttgggtttaggtgcagctctgtcggcggtgcccagcggttgccgggctctgtgtgccagc
tgtcagaacatcagcggaggtctgtggggcacgttgctcaacatcctgctggatcagcag
gagagcagcatggtgcgcagagaggctgcatttattctgcagaacctgatggtgatgcca
atgcctgccaatgcagagaaggccaaggactcccactggcagcacccgtgtgtccatgat
gaggtgtctggtgtgtctctggtgggtcttccagcactccaggctctcctttaccactgt
cagtacttccaacacgtggctctctctgcctccaaatgttacctcggcaggtacacattc
aacctgcagccttgtgctgccaccaccggtggaccccatcctcaggagggcaattccctg
aattctgagaattctctttggttatggcgatgtgacgccccaactacaaactccagcaga
ccctccagctccctctccacctccagcaccgtgactagaggttccggtccagacagcccc
aagggtccctccccatcgagcaccgtgaaggataatccagtaagccgactgatgactcaa
ggtcagagtgacacagacgccagcgactcactgacctcccaggactcccgacaaggcgag
accccgccgctggaactggttgtcatggtaactgccgacctcatgacggcccactgtggc
ctgctggctaacctgctggccatcctgccagacttcaccctcgctgccgtccgacacaac
cagctcctccgagcgctggccagtctgctagatattgggctcattgagaaatgtctgact
gagctgaagacacccagcatcctaacatgggagagagaagacatcaagatccagtttgtc
accctgctgcagttcctgtccagcttctccaaactgctgcggtcatgtgtcctggtgagc
aaggagctgattggccagatggacttcctaagacggcttttgacttctctggtggctgta
ctcatgttggataccaaaggactggacgcaggtacccgggacgtggtgtgcgtgtgctgg
gcagacgtgtttatgctcctggctactctggtgaggagggacatctcagcagcgtaccca
tctgtctctgctgcgctggggagacgctggcggacatttgcaggaacattatctgtgtgt
gtgaatgagaagtggacggatcctcttctccacacagtggctctgcagttcctcagtaca
atattcacagcagagacagacagtcggggagcggaggtccagacctcgaactccaaacct
gccacggctctgtctgacattgtgaatggtccctcagccagcgagctgtgtgaactctta
ctgcagaggacccttcaggaccctttaagacgcaganncggcgctgctctgatggcactg
ttggccagcagtccctctgctcaaaaacacgcagccaaagctggtctaatagacagctgc
gttgagcaaatgaagcaaactcactcccagctccacctggagtctgttcgacccggcaaa
gcttcccaccgcagaaaggaagaaggctatttaaaagaagtcaagctgactgtggagatc
ctacggaatgctctttatcgcaacgacgaatgcaaagtggtggccacagatgctcgcctc
acactggcactctatgctctttggccttggctgctattggatgaccccaccatggaggcg
gtgctggagcttctgtgcgtctatacggccaactgccccggagcatgcagttgcgtcggt
ggcgccggctccggtgcagcaccaggatctaaaggcaccccgagcacctctctgatgcac
tcggtcatgaggctggcctcgggcgtcgccccagataactgctctgtccagaagctctcc
ttctgtctcctggccaacctcgccatgtcccgcgactgcagatgcctcctgcaaaagaat
aacttcctgcaggccttcccgtcggtgccgatgcccaagccgggcggggccaaggtcgcg
gccgtcagcgggggcccgctgggcctgtggctgaggctgctggtcagcgtctcgtgcgca
gaggacggccagctgagcatctttagggtgaccggagctttggaactgctggctgacctg
gcgccgcaccggcgccacgcgcttctcacccttcacaacctctgcttctgccctgccagc
aagcagcacgtcgtggccaatgacaaagccaccaaggcgctactctgctgtctgagcagt
aaggagatggaaacccgctccatggcagcctctgcactttgggcgttgctccataacaat
caaagggctaagactacattgaagtgtccctctattcggttgaggattgaggaggcgcgt
gccatctctagaaaggaggccgagaacaagcaggatccgacgagtacctacctgctgaag
tgccttgaaaatctttcccatctgttaaataactaa
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integrated database retrieval system
