Gasterosteus aculeatus (three-spined stickleback): 120811342
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Entry
120811342 CDS
T07457
Symbol
vps41
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04140
Autophagy - animal
gat04148
Efferocytosis
gat05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
120811342 (vps41)
04148 Efferocytosis
120811342 (vps41)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
120811342 (vps41)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gat04131
]
120811342 (vps41)
Membrane trafficking [BR:
gat04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
120811342 (vps41)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
WD40_CDC20-Fz
zf_RING_Vps8_fungal
Beta-prop_HPS5
WD40_Prp19
Beta-prop_EML_2
Beta-prop_RIG_2nd
TPR_7
WD40_WDHD1_1st
Vps39_1
zf_RING_Vps8
TPR_PEP5_VPS11
TPR_19
Helicase_PWI
zf-Vps39_C
zf-RING_5
Beta-prop_IFT140_2nd
Motif
Other DBs
NCBI-GeneID:
120811342
NCBI-ProteinID:
XP_040022543
UniProt:
G3NKF9
LinkDB
All DBs
Position
XXI:complement(13871339..13885046)
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AA seq
854 aa
AA seq
DB search
MADVEQQGRKQSEEFTDESEEEDSEDEPKLKYERLSNGVTEILQKDAASCMTVHDKFLAL
GTHFGKVFLLDIQGNVTQKFEISSVKINQISLDESGEHVGICSEDGKVQVFGLYTREGFH
ENFDCPIKVVALHPQFSRSNYKQFVTGGNKLLLYERNWLNRWKMSVLHEGEGSITNIQWR
SNLIAWANNVGVKIYDIGTKQRITNVLRDNVSLRPDMYPCSLCWKDNCTLIVGWGTSIKI
CVVKERNPTEMRDLPSRYVEIVSAFETEFFISGLAPLADQLVTLYFVKENSDHMDEEFRA
RPRLDIIQPLPESCEEISSDALTVRNFQDNECRDYRLEHSEGESLFYIISPKDIVVAKER
DQDDHIDWLLEKKKYEEALMAAEISFKNIKRHDVQKIGMGYINHLVEKGDYDAAARKCQK
VLGKNMELWENEVYRFKTIGQLKAISQYLPRGDLRLRPAIYEMILHEFLKTDYEGFATLI
REWPGELYNNMAIVQAVNDHLKRDPANRTLLTTLAELYTYDQRYDRALEIYLRLRHKDVY
QLIHKHDLFSSIEDKIILLMDFDKEKAVDMLLDNEDKISTDRVVEELADRPELLHVYLHK
LFKRDHHKGQKYHEKQIVLYAEYDRPNLLPFLRDSTHCPLEKALEVCQQRNFVEETVFLL
SRMGNCRRALQMIMEELEDVDKAIEFAKEQDDAELWEDLISYSIDKPPFITGLLNNIGTH
VDPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLQKMHRTQM
RGVRVDEENICESCHAAILPSDMAKPFSVVVFHCRHMFHKECLPSSGTVPGVQFCNICSA
KKRGPRSGILELKK
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgtggaacagcagggcagaaaacaaagtgaggaattcacagatgagtctgag
gaggaggacagcgaggacgagcccaagctgaagtacgagaggctgtccaacggggtgaca
gaaatcctgcagaaggacgcagccagctgtatgaccgtccacgacaagtttcttgcacta
gggacccattttggaaaagtcttcctgctggacatccaaggaaatgtaactcagaagttt
gaaattagttcagtgaagatcaaccagatcagtctggatgaaagtggagagcatgtgggc
atctgctccgaggatgggaaggttcaggtgttcggcctctatacgagagagggcttccac
gagaactttgactgccccatcaaagttgttgcattacatccccagttcagcagatcaaac
tacaaacagtttgtcaccgggggcaacaagctgctcctgtacgaaagaaactggttgaac
cgctggaagatgtccgtcctacacgaaggcgagggctccatcaccaacatccagtggaga
agtaacctcatcgcgtgggccaacaacgtgggagttaaaatctatgacatcggtacaaag
cagcggatcacaaacgtgctgcgcgacaacgtcagcctgaggccggacatgtacccctgc
agcctgtgttggaaggacaactgcactctcattgtcggctggggcacgtccatcaagatt
tgtgttgtgaaagagagaaatccgacggaaatgagagacctgcccagccgctatgtggaa
atagtttctgcatttgagaccgagttcttcatcagtggtctggccccactggcggatcag
ctggtcaccctgtactttgtgaaggagaactctgaccacatggatgaggagttccgcgcg
cggcctcgtctcgacatcatccagcctctccccgagagctgcgaggagatctcctcggac
gcgctgaccgtgcgcaacttccaagacaacgagtgcagagactaccgcctcgagcattct
gagggagagtcgctcttctacatcatcagtcccaaagacattgtcgtggccaaggagcga
gaccaggacgaccatatcgattggctgctcgaaaagaagaaatatgaggaggcgctaatg
gctgccgagatcagcttcaaaaacatcaagagacatgacgttcagaaaattgggatgggt
tacatcaatcacttagtggagaaaggagactacgacgctgctgcgaggaagtgtcagaag
gttcttggaaaaaacatggaactatgggaaaatgaagtataccggttcaagaccattgga
cagcttaaggccatcagtcagtatttgcccagaggagatctgcgtctcagaccggccatc
tacgaaatgatcttgcatgaatttctcaaaactgactatgagggttttgccacgctgatc
cgggaatggcctggagagctttataataacatggccatcgttcaggcagtcaacgatcac
ttgaagagggaccccgccaacagaacgctgctcaccacgttagctgaactatacacgtac
gaccagcggtacgacagagccttggaaatctacctgagactgaggcacaaagacgtttac
cagctgatccacaaacacgaccttttctcctccatagaggacaagatcatactactcatg
gacttcgacaaagaaaaagctgttgacatgcttctcgacaacgaggacaagatatcgaca
gacagggtggtggaagaactggccgacaggcccgagcttctgcacgtgtatctccataaa
ctgtttaagcgggatcaccacaaaggccaaaagtaccacgagaaacagatcgtcctctat
gccgagtatgaccgtcccaatctcttgcctttcctcagagacagcacacactgcccgctt
gaaaaggctctggaggtttgccagcagaggaactttgtagaggagacagtcttcctgctc
agtaggatggggaactgcagacgagctctgcagatgatcatggaggagctggaggacgtg
gacaaggccattgagtttgccaaagagcaggacgatgccgagctctgggaggatctcatc
tcttattctattgataaaccaccattcatcacggggctcctcaataacatcggtactcat
gtggatcccatcctgctcatccatcgcatcaaggagggcatggaaatcccaaacctcagg
gactcactagtaaaaatcctccaggactacaatctacaaattcttctgcgggaaggctgt
aagaagatcctggtggccgactccctctcgctgctccagaagatgcaccgaacacagatg
aggggagtccgggtcgacgaggagaacatttgtgaatcatgtcatgctgcaatattacct
tcagatatggccaaacccttcagtgtggttgtgtttcactgcagacacatgtttcacaag
gaatgtttaccatcttcaggaacagttcctggggtgcagttttgtaacatctgcagtgca
aagaagcgcgggccaagaagcggaatcctggagttgaaaaaataa
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integrated database retrieval system
